Analysis of interatomic Contacts of Structural Units in PDB entry:
7YSV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YSV entry

There are 4 chains in PDB entry 7YSV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	PRO 786
B	GLN 1	PRO 786
C	GLN 1	PRO 786
D	GLN 1	PRO 786

There are 85 helices in PDB entry 7YSV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	34	Right-handed alpha
Helix 2	AA2	A	54	69	Right-handed alpha
Helix 3	AA3	A	78	92	Right-handed alpha
Helix 4	AA4	A	119	135	Right-handed alpha
Helix 5	AA5	A	147	162	Right-handed alpha
Helix 6	AA6	A	177	188	Right-handed alpha
Helix 7	AA7	A	198	213	Right-handed alpha
Helix 8	AA8	A	253	269	Right-handed alpha
Helix 9	AA9	A	284	304	Right-handed alpha
Helix 10	AB1	A	321	332	Right-handed alpha
Helix 11	AB2	A	443	456	Right-handed alpha
Helix 12	AB3	A	481	488	Right-handed alpha
Helix 13	AB4	A	501	506	Right-handed alpha
Helix 14	AB5	A	653	658	Right-handed alpha
Helix 15	AB6	A	669	678	Right-handed alpha
Helix 16	AB7	A	680	696	Right-handed alpha
Helix 17	AB8	A	701	712	Right-handed alpha
Helix 18	AB9	A	720	730	Right-handed alpha
Helix 19	AC1	A	755	770	Right-handed alpha
Helix 20	AC2	A	771	780	Right-handed alpha
Helix 21	AC3	B	18	34	Right-handed alpha
Helix 22	AC4	B	57	69	Right-handed alpha
Helix 23	AC5	B	78	92	Right-handed alpha
Helix 24	AC6	B	119	135	Right-handed alpha
Helix 25	AC7	B	145	151	Right-handed 310
Helix 26	AC8	B	157	161	Right-handed 310
Helix 27	AC9	B	178	188	Right-handed alpha
Helix 28	AD1	B	198	212	Right-handed alpha
Helix 29	AD2	B	253	269	Right-handed alpha
Helix 30	AD3	B	285	304	Right-handed alpha
Helix 31	AD4	B	321	332	Right-handed alpha
Helix 32	AD5	B	437	439	Right-handed 310
Helix 33	AD6	B	443	457	Right-handed alpha
Helix 34	AD7	B	481	488	Right-handed alpha
Helix 35	AD8	B	651	657	Right-handed alpha
Helix 36	AD9	B	669	678	Right-handed alpha
Helix 37	AE1	B	680	691	Right-handed alpha
Helix 38	AE2	B	691	696	Right-handed alpha
Helix 39	AE3	B	701	712	Right-handed alpha
Helix 40	AE4	B	720	728	Right-handed alpha
Helix 41	AE5	B	753	769	Right-handed alpha
Helix 42	AE6	B	770	780	Right-handed alpha
Helix 43	AE7	C	18	34	Right-handed alpha
Helix 44	AE8	C	55	69	Right-handed alpha
Helix 45	AE9	C	78	91	Right-handed alpha
Helix 46	AF1	C	92	94	Right-handed 310
Helix 47	AF2	C	119	135	Right-handed alpha
Helix 48	AF3	C	145	152	Right-handed 310
Helix 49	AF4	C	174	176	Right-handed 310
Helix 50	AF5	C	177	188	Right-handed alpha
Helix 51	AF6	C	198	212	Right-handed alpha
Helix 52	AF7	C	253	270	Right-handed alpha
Helix 53	AF8	C	284	304	Right-handed alpha
Helix 54	AF9	C	322	332	Right-handed alpha
Helix 55	AG1	C	443	457	Right-handed alpha
Helix 56	AG2	C	481	488	Right-handed alpha
Helix 57	AG3	C	502	506	Right-handed 310
Helix 58	AG4	C	651	658	Right-handed alpha
Helix 59	AG5	C	669	678	Right-handed alpha
Helix 60	AG6	C	680	696	Right-handed alpha
Helix 61	AG7	C	701	712	Right-handed alpha
Helix 62	AG8	C	720	730	Right-handed alpha
Helix 63	AG9	C	755	770	Right-handed alpha
Helix 64	AH1	C	770	781	Right-handed alpha
Helix 65	AH2	D	19	34	Right-handed alpha
Helix 66	AH3	D	54	69	Right-handed alpha
Helix 67	AH4	D	78	93	Right-handed alpha
Helix 68	AH5	D	119	134	Right-handed alpha
Helix 69	AH6	D	145	162	Right-handed alpha
Helix 70	AH7	D	178	188	Right-handed alpha
Helix 71	AH8	D	198	213	Right-handed alpha
Helix 72	AH9	D	253	269	Right-handed alpha
Helix 73	AI1	D	284	304	Right-handed alpha
Helix 74	AI2	D	321	332	Right-handed alpha
Helix 75	AI3	D	443	457	Right-handed alpha
Helix 76	AI4	D	481	488	Right-handed alpha
Helix 77	AI5	D	502	506	Right-handed 310
Helix 78	AI6	D	651	657	Right-handed alpha
Helix 79	AI7	D	670	678	Right-handed alpha
Helix 80	AI8	D	680	692	Right-handed alpha
Helix 81	AI9	D	693	696	Right-handed 310
Helix 82	AJ1	D	701	712	Right-handed alpha
Helix 83	AJ2	D	720	730	Right-handed alpha
Helix 84	AJ3	D	753	769	Right-handed alpha
Helix 85	AJ4	D	770	779	Right-handed alpha

There are 32 sheets in PDB entry 7YSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	51	first strand
Strand 2	A	2	11	parallel
Strand 3	A	73	74	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	113	115	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	170	first strand
Strand 2	A	138	143	parallel
Strand 3	A	192	196	parallel
Strand 4	A	220	223	parallel
Strand 5	A	242	247	parallel
Strand 6	A	355	360	anti-parallel
Strand 7	A	382	388	anti-parallel
Strand 8	A	393	394	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	340	342	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	419	first strand
Strand 2	A	459	464	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	428	first strand
Strand 2	A	441	442	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	736	748	anti-parallel
Strand 3	A	515	522	anti-parallel
Strand 4	A	715	719	anti-parallel
Strand 5	A	663	666	parallel
Strand 6	A	698	699	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	50	first strand
Strand 2	B	2	10	parallel
Strand 3	B	73	74	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	113	115	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	170	first strand
Strand 2	B	138	143	parallel
Strand 3	B	193	196	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	223	first strand
Strand 2	B	242	247	parallel
Strand 3	B	356	361	anti-parallel
Strand 4	B	382	388	anti-parallel
Strand 5	B	392	394	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	337	first strand
Strand 2	B	340	344	anti-parallel
Strand 3	B	351	352	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	464	first strand
Strand 2	B	415	419	parallel
Strand 3	B	493	494	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	428	first strand
Strand 2	B	441	442	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	499	first strand
Strand 2	B	745	747	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	663	664	first strand
Strand 2	B	715	719	parallel
Strand 3	B	518	522	anti-parallel
Strand 4	B	739	742	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	51	first strand
Strand 2	C	6	11	parallel
Strand 3	C	73	74	parallel
Strand 4	C	96	98	parallel
Strand 5	C	113	115	parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	170	first strand
Strand 2	C	138	143	parallel
Strand 3	C	192	195	parallel
Strand 4	C	220	223	parallel
Strand 5	C	242	247	parallel
Strand 6	C	356	360	anti-parallel
Strand 7	C	382	388	anti-parallel
Strand 8	C	392	395	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	337	first strand
Strand 2	C	340	341	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	414	419	first strand
Strand 2	C	459	464	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	428	first strand
Strand 2	C	441	442	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	509	first strand
Strand 2	C	749	750	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	516	517	first strand
Strand 2	C	743	744	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	662	664	first strand
Strand 2	C	714	719	parallel
Strand 3	C	519	524	anti-parallel
Strand 4	C	733	736	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	4	first strand
Strand 2	D	42	44	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	73	74	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	98	first strand
Strand 2	D	114	115	parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	170	first strand
Strand 2	D	138	143	parallel
Strand 3	D	192	195	parallel
Strand 4	D	220	223	parallel
Strand 5	D	242	247	parallel
Strand 6	D	355	360	anti-parallel
Strand 7	D	382	388	anti-parallel
Strand 8	D	392	395	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	336	first strand
Strand 2	D	341	344	anti-parallel
Strand 3	D	351	352	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	459	464	first strand
Strand 2	D	414	419	parallel
Strand 3	D	493	500	parallel
Strand 4	D	744	748	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	427	428	first strand
Strand 2	D	441	442	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	662	664	first strand
Strand 2	D	714	719	parallel
Strand 3	D	519	524	anti-parallel
Strand 4	D	733	736	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YSV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YSV