Analysis of interatomic Contacts of Structural Units in PDB entry:
7YTD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YTD entry

There are 15 chains in PDB entry 7YTD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 345	GLY 573
B	ILE 345	SER 569
C	ILE 345	SER 569
D	ILE 345	SER 569
E	ILE 345	MET 568
F	ILE 345	MET 568
G	ILE 345	MET 568
H	ILE 345	MET 568
J	ARG 4	PRO 135
K	ILE 345	SER 569
L	ILE 345	CYS 575
R	ARG 18	SER 124
S	ARG 18	SER 124
U	ARG 18	SER 124
V	ARG 18	SER 124

There are 47 helices in PDB entry 7YTD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	353	360	Right-handed alpha
Helix 2	AA2	A	414	420	Right-handed alpha
Helix 3	AA3	A	461	466	Right-handed 310
Helix 4	AA4	A	524	530	Right-handed alpha
Helix 5	AA5	B	353	361	Right-handed alpha
Helix 6	AA6	B	415	421	Right-handed alpha
Helix 7	AA7	B	462	467	Right-handed alpha
Helix 8	AA8	B	524	530	Right-handed alpha
Helix 9	AA9	C	353	361	Right-handed alpha
Helix 10	AB1	C	414	420	Right-handed alpha
Helix 11	AB2	C	524	530	Right-handed alpha
Helix 12	AB3	D	353	360	Right-handed alpha
Helix 13	AB4	D	414	419	Right-handed alpha
Helix 14	AB5	D	460	467	Right-handed alpha
Helix 15	AB6	D	524	531	Right-handed alpha
Helix 16	AB7	E	353	360	Right-handed alpha
Helix 17	AB8	E	414	419	Right-handed alpha
Helix 18	AB9	E	462	467	Right-handed alpha
Helix 19	AC1	E	524	529	Right-handed alpha
Helix 20	AC2	F	353	361	Right-handed alpha
Helix 21	AC3	F	414	419	Right-handed alpha
Helix 22	AC4	F	462	466	Right-handed 310
Helix 23	AC5	F	524	531	Right-handed alpha
Helix 24	AC6	G	353	359	Right-handed alpha
Helix 25	AC7	G	414	421	Right-handed alpha
Helix 26	AC8	G	462	466	Right-handed 310
Helix 27	AC9	G	524	531	Right-handed alpha
Helix 28	AD1	G	553	557	Right-handed 310
Helix 29	AD2	H	353	361	Right-handed alpha
Helix 30	AD3	H	414	421	Right-handed alpha
Helix 31	AD4	H	462	466	Right-handed 310
Helix 32	AD5	H	524	530	Right-handed alpha
Helix 33	AD6	J	65	69	Right-handed 310
Helix 34	AD7	K	353	361	Right-handed alpha
Helix 35	AD8	K	414	419	Right-handed alpha
Helix 36	AD9	K	460	465	Right-handed alpha
Helix 37	AE1	K	496	498	Right-handed 310
Helix 38	AE2	K	525	531	Right-handed alpha
Helix 39	AE3	K	553	558	Right-handed alpha
Helix 40	AE4	L	353	358	Right-handed alpha
Helix 41	AE5	L	414	418	Right-handed 310
Helix 42	AE6	L	460	465	Right-handed alpha
Helix 43	AE7	L	525	531	Right-handed alpha
Helix 44	AE8	R	109	113	Right-handed alpha
Helix 45	AE9	U	69	73	Right-handed 310
Helix 46	AF1	U	109	113	Right-handed alpha
Helix 47	AF2	V	109	113	Right-handed alpha

There are 65 sheets in PDB entry 7YTD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1, AH2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	364	372	anti-parallel
Strand 3	A	405	412	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	383	first strand
Strand 2	A	424	430	anti-parallel
Strand 3	A	433	441	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	470	477	anti-parallel
Strand 3	A	515	523	anti-parallel
Strand 4	A	501	502	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	470	477	anti-parallel
Strand 3	A	515	523	anti-parallel
Strand 4	A	506	507	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	486	490	anti-parallel
Strand 3	A	534	539	anti-parallel
Strand 4	A	547	552	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	568	569	first strand
Strand 2	J	62	63	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	350	first strand
Strand 2	B	363	370	anti-parallel
Strand 3	B	411	413	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	383	first strand
Strand 2	B	423	428	anti-parallel
Strand 3	B	437	438	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	383	first strand
Strand 2	B	423	428	anti-parallel
Strand 3	B	441	442	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	457	first strand
Strand 2	B	470	479	anti-parallel
Strand 3	B	515	523	anti-parallel
Strand 4	B	500	502	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	457	first strand
Strand 2	B	470	479	anti-parallel
Strand 3	B	515	523	anti-parallel
Strand 4	B	506	507	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	494	first strand
Strand 2	B	485	490	anti-parallel
Strand 3	B	534	539	anti-parallel
Strand 4	B	547	552	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	350	first strand
Strand 2	C	364	372	anti-parallel
Strand 3	C	404	407	anti-parallel
Strand 4	C	399	400	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	350	first strand
Strand 2	C	364	372	anti-parallel
Strand 3	C	410	412	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	383	first strand
Strand 2	C	424	428	anti-parallel
Strand 3	C	437	441	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	457	first strand
Strand 2	C	470	479	anti-parallel
Strand 3	C	519	523	anti-parallel
Strand 4	C	500	502	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	457	first strand
Strand 2	C	470	479	anti-parallel
Strand 3	C	511	517	anti-parallel
Strand 4	C	506	508	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	493	494	first strand
Strand 2	C	485	490	anti-parallel
Strand 3	C	534	539	anti-parallel
Strand 4	C	547	552	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	350	first strand
Strand 2	D	365	370	anti-parallel
Strand 3	D	406	411	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	383	first strand
Strand 2	D	425	429	anti-parallel
Strand 3	D	437	438	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	457	first strand
Strand 2	D	472	479	anti-parallel
Strand 3	D	515	521	anti-parallel
Strand 4	D	500	502	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	453	457	first strand
Strand 2	D	472	479	anti-parallel
Strand 3	D	515	521	anti-parallel
Strand 4	D	506	507	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	493	494	first strand
Strand 2	D	485	490	anti-parallel
Strand 3	D	535	539	anti-parallel
Strand 4	D	548	550	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	350	first strand
Strand 2	E	365	373	anti-parallel
Strand 3	E	404	411	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	379	383	first strand
Strand 2	E	424	429	anti-parallel
Strand 3	E	437	441	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	457	first strand
Strand 2	E	470	479	anti-parallel
Strand 3	E	515	523	anti-parallel
Strand 4	E	500	502	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	457	first strand
Strand 2	E	470	479	anti-parallel
Strand 3	E	515	523	anti-parallel
Strand 4	E	506	507	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	485	489	first strand
Strand 2	E	534	539	anti-parallel
Strand 3	E	548	552	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	350	first strand
Strand 2	F	366	369	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	379	383	first strand
Strand 2	F	424	429	anti-parallel
Strand 3	F	440	441	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	455	457	first strand
Strand 2	F	470	479	anti-parallel
Strand 3	F	515	523	anti-parallel
Strand 4	F	501	502	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	455	457	first strand
Strand 2	F	470	479	anti-parallel
Strand 3	F	515	523	anti-parallel
Strand 4	F	506	507	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	493	494	first strand
Strand 2	F	485	490	anti-parallel
Strand 3	F	535	539	anti-parallel
Strand 4	F	547	550	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	565	567	first strand
Strand 2	G	565	567	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	347	350	first strand
Strand 2	G	364	372	anti-parallel
Strand 3	G	405	412	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	379	383	first strand
Strand 2	G	424	429	anti-parallel
Strand 3	G	437	441	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	453	457	first strand
Strand 2	G	470	479	anti-parallel
Strand 3	G	515	523	anti-parallel
Strand 4	G	500	502	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	453	457	first strand
Strand 2	G	470	479	anti-parallel
Strand 3	G	515	523	anti-parallel
Strand 4	G	506	507	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	493	494	first strand
Strand 2	G	485	490	anti-parallel
Strand 3	G	535	539	anti-parallel
Strand 4	G	547	550	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	346	350	first strand
Strand 2	H	365	370	anti-parallel
Strand 3	H	409	411	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	379	383	first strand
Strand 2	H	424	429	anti-parallel
Strand 3	H	437	441	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	455	457	first strand
Strand 2	H	470	475	anti-parallel
Strand 3	H	519	523	anti-parallel
Strand 4	H	500	502	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	493	494	first strand
Strand 2	H	486	490	anti-parallel
Strand 3	H	535	539	anti-parallel
Strand 4	H	547	550	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	506	507	first strand
Strand 2	H	515	516	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	40	41	first strand
Strand 2	L	567	568	parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	110	113	first strand
Strand 2	J	124	127	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	347	350	first strand
Strand 2	K	364	369	anti-parallel
Strand 3	K	411	412	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	378	384	first strand
Strand 2	K	424	430	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	453	457	first strand
Strand 2	K	469	479	anti-parallel
Strand 3	K	515	524	anti-parallel
Strand 4	K	500	502	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	453	457	first strand
Strand 2	K	469	479	anti-parallel
Strand 3	K	515	524	anti-parallel
Strand 4	K	506	507	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	485	489	first strand
Strand 2	K	535	539	anti-parallel
Strand 3	K	547	550	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	564	565	first strand
Strand 2	L	564	565	parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	346	350	first strand
Strand 2	L	364	372	anti-parallel
Strand 3	L	405	412	anti-parallel

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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	381	384	first strand
Strand 2	L	424	427	anti-parallel
Strand 3	L	440	441	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	457	first strand
Strand 2	L	469	479	anti-parallel
Strand 3	L	515	524	anti-parallel
Strand 4	L	500	502	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	453	457	first strand
Strand 2	L	469	479	anti-parallel
Strand 3	L	515	524	anti-parallel
Strand 4	L	506	507	anti-parallel

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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	493	494	first strand
Strand 2	L	485	490	anti-parallel
Strand 3	L	535	539	anti-parallel
Strand 4	L	550	551	anti-parallel

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There are 3 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	33	38	first strand
Strand 2	R	86	91	anti-parallel
Strand 3	R	76	81	anti-parallel

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There are 4 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	57	62	first strand
Strand 2	R	46	52	anti-parallel
Strand 3	R	101	106	anti-parallel
Strand 4	R	114	119	anti-parallel

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There are 3 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	33	38	first strand
Strand 2	S	86	91	anti-parallel
Strand 3	S	76	81	anti-parallel

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There are 4 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	57	62	first strand
Strand 2	S	47	52	anti-parallel
Strand 3	S	102	105	anti-parallel
Strand 4	S	114	118	anti-parallel

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There are 3 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	33	38	first strand
Strand 2	U	86	91	anti-parallel
Strand 3	U	76	81	anti-parallel

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There are 4 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	57	63	first strand
Strand 2	U	46	52	anti-parallel
Strand 3	U	101	106	anti-parallel
Strand 4	U	114	119	anti-parallel

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There are 3 strands in AH1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	33	38	first strand
Strand 2	V	86	91	anti-parallel
Strand 3	V	76	79	anti-parallel

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There are 4 strands in AH2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	57	62	first strand
Strand 2	V	47	52	anti-parallel
Strand 3	V	102	105	anti-parallel
Strand 4	V	114	116	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 7YTD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YTD