Analysis of interatomic Contacts of Structural Units in PDB entry:
7YTE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YTE entry

There are 4 chains in PDB entry 7YTE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 446	GLY 557
B	GLY 446	GLY 557
D	ARG 18	SER 124
C	LEU 20	SER 124

There are 12 helices in PDB entry 7YTE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	460	465	Right-handed alpha
Helix 2	AA2	A	496	498	Right-handed 310
Helix 3	AA3	A	525	531	Right-handed alpha
Helix 4	AA4	B	460	466	Right-handed alpha
Helix 5	AA5	B	496	498	Right-handed 310
Helix 6	AA6	B	525	530	Right-handed alpha
Helix 7	AA7	D	70	73	Right-handed 310
Helix 8	AA8	D	82	84	Right-handed 310
Helix 9	AA9	D	95	99	Right-handed 310
Helix 10	AB1	C	70	73	Right-handed 310
Helix 11	AB2	C	82	84	Right-handed 310
Helix 12	AB3	C	95	99	Right-handed 310

There are 10 sheets in PDB entry 7YTE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	469	479	anti-parallel
Strand 3	A	515	524	anti-parallel
Strand 4	A	500	502	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	469	479	anti-parallel
Strand 3	A	515	524	anti-parallel
Strand 4	A	506	507	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	485	490	anti-parallel
Strand 3	A	534	539	anti-parallel
Strand 4	A	547	552	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	457	first strand
Strand 2	B	469	479	anti-parallel
Strand 3	B	515	524	anti-parallel
Strand 4	B	500	502	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	457	first strand
Strand 2	B	469	479	anti-parallel
Strand 3	B	515	524	anti-parallel
Strand 4	B	506	507	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	494	first strand
Strand 2	B	485	490	anti-parallel
Strand 3	B	534	539	anti-parallel
Strand 4	B	547	552	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	28	first strand
Strand 2	D	114	123	parallel
Strand 3	D	100	106	anti-parallel
Strand 4	D	46	51	anti-parallel
Strand 5	D	58	63	anti-parallel
Strand 6	D	67	68	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	38	first strand
Strand 2	D	86	91	anti-parallel
Strand 3	D	76	81	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	28	first strand
Strand 2	C	116	123	parallel
Strand 3	C	100	106	anti-parallel
Strand 4	C	46	52	anti-parallel
Strand 5	C	57	63	anti-parallel
Strand 6	C	67	68	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	38	first strand
Strand 2	C	86	91	anti-parallel
Strand 3	C	76	81	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YTE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YTE