Analysis of interatomic Contacts of Structural Units in PDB entry:
7YTH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YTH entry

There are 4 chains in PDB entry 7YTH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 320
B
 SER 2LYS 320
C
 SER 2HIS 321
D
 SER 2VAL 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 62 helices in PDB entry 7YTH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
19 30Right-handed alpha
Helix 3
AA3
A
32 46Right-handed alpha
Helix 4
AA4
A
61 73Right-handed alpha
Helix 5
AA5
A
75 89Right-handed alpha
Helix 6
AA6
A
92 101Right-handed alpha
Helix 7
AA7
A
102 119Right-handed alpha
Helix 8
AA8
A
132 145Right-handed alpha
Helix 9
AA9
A
146 160Right-handed alpha
Helix 10
AB1
A
183 187Right-handed 310
Helix 11
AB2
A
197 209Right-handed alpha
Helix 12
AB3
A
211 218Right-handed alpha
Helix 13
AB4
A
235 247Right-handed alpha
Helix 14
AB5
A
263 265Right-handed 310
Helix 15
AB6
A
280 283Right-handed 310
Helix 16
AB7
A
310 316Right-handed 310
Helix 17
AB8
B
4 9Right-handed alpha
Helix 18
AB9
B
19 30Right-handed alpha
Helix 19
AC1
B
32 46Right-handed alpha
Helix 20
AC2
B
61 74Right-handed alpha
Helix 21
AC3
B
75 89Right-handed alpha
Helix 22
AC4
B
92 101Right-handed alpha
Helix 23
AC5
B
102 119Right-handed alpha
Helix 24
AC6
B
132 145Right-handed alpha
Helix 25
AC7
B
146 160Right-handed alpha
Helix 26
AC8
B
183 187Right-handed 310
Helix 27
AC9
B
197 209Right-handed alpha
Helix 28
AD1
B
211 217Right-handed alpha
Helix 29
AD2
B
235 247Right-handed alpha
Helix 30
AD3
B
263 265Right-handed 310
Helix 31
AD4
B
280 284Right-handed 310
Helix 32
AD5
B
310 315Right-handed 310
Helix 33
AD6
C
4 9Right-handed alpha
Helix 34
AD7
C
19 30Right-handed alpha
Helix 35
AD8
C
32 47Right-handed alpha
Helix 36
AD9
C
61 74Right-handed alpha
Helix 37
AE1
C
75 89Right-handed alpha
Helix 38
AE2
C
92 101Right-handed alpha
Helix 39
AE3
C
102 119Right-handed alpha
Helix 40
AE4
C
132 145Right-handed alpha
Helix 41
AE5
C
146 160Right-handed alpha
Helix 42
AE6
C
183 187Right-handed 310
Helix 43
AE7
C
197 209Right-handed alpha
Helix 44
AE8
C
211 218Right-handed alpha
Helix 45
AE9
C
235 247Right-handed alpha
Helix 46
AF1
C
263 265Right-handed 310
Helix 47
AF2
C
280 283Right-handed 310
Helix 48
AF3
C
310 316Right-handed 310
Helix 49
AF4
D
4 9Right-handed alpha
Helix 50
AF5
D
19 31Right-handed alpha
Helix 51
AF6
D
32 47Right-handed alpha
Helix 52
AF7
D
61 74Right-handed alpha
Helix 53
AF8
D
75 88Right-handed alpha
Helix 54
AF9
D
92 101Right-handed alpha
Helix 55
AG1
D
102 119Right-handed alpha
Helix 56
AG2
D
132 145Right-handed alpha
Helix 57
AG3
D
146 160Right-handed alpha
Helix 58
AG4
D
183 187Right-handed 310
Helix 59
AG5
D
197 209Right-handed alpha
Helix 60
AG6
D
211 217Right-handed alpha
Helix 61
AG7
D
235 247Right-handed alpha
Helix 62
AG8
D
263 265Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 7YTH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
219 226anti-parallel
Strand 3
A
300 307parallel
Strand 4
A
285 294anti-parallel
Strand 5
A
267 276anti-parallel
Strand 6
A
251 261anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
219 226anti-parallel
Strand 3
B
300 307parallel
Strand 4
B
286 294anti-parallel
Strand 5
B
267 276anti-parallel
Strand 6
B
251 261anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
233 234first strand
Strand 2
C
219 226anti-parallel
Strand 3
C
300 307parallel
Strand 4
C
285 294anti-parallel
Strand 5
C
267 276anti-parallel
Strand 6
C
251 261anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
233 234first strand
Strand 2
D
219 226anti-parallel
Strand 3
D
300 307parallel
Strand 4
D
281 294anti-parallel
Strand 5
D
267 277anti-parallel
Strand 6
D
251 261anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il