Analysis of interatomic Contacts of Structural Units in PDB entry:
7YTL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YTL entry

There is 1 chain in PDB entry 7YTL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 11SER 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7YTL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 32Right-handed alpha
Helix 2
AA2
A
50 55Right-handed alpha
Helix 3
AA3
A
60 63Right-handed 310
Helix 4
AA4
A
68 73Right-handed alpha
Helix 5
AA5
A
123 141Right-handed alpha
Helix 6
AA6
A
150 164Right-handed alpha
Helix 7
AA7
A
184 198Right-handed alpha
Helix 8
AA8
A
210 214Right-handed 310
Helix 9
AA9
A
251 256Right-handed alpha
Helix 10
AB1
A
283 286Right-handed 310
Helix 11
AB2
A
293 313Right-handed alpha
Helix 12
AB3
A
359 368Right-handed alpha
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There are 7 sheets in PDB entry 7YTL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
36 40parallel
Strand 3
A
13 16parallel
Strand 4
A
103 106parallel
Strand 5
A
279 281parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
65 67anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
90 93anti-parallel
Strand 3
A
98 100anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
245 246anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
168 172parallel
Strand 3
A
143 147parallel
Strand 4
A
237 240parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 226first strand
Strand 2
A
232 235anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 344first strand
Strand 2
A
347 351anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il