Analysis of interatomic Contacts of Structural Units in PDB entry:
7YTO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YTO entry

There are 4 chains in PDB entry 7YTO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ASP 4	ASN 404
E	ASP 4	ASN 404
F	ASP 4	ASN 404
A	ASP 4	TYR 56

There are 76 helices in PDB entry 7YTO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	22	40	Right-handed alpha
Helix 2	AA2	D	49	58	Right-handed alpha
Helix 3	AA3	D	87	93	Right-handed alpha
Helix 4	AA4	D	106	116	Right-handed alpha
Helix 5	AA5	D	130	141	Right-handed alpha
Helix 6	AA6	D	149	157	Right-handed alpha
Helix 7	AA7	D	161	185	Right-handed alpha
Helix 8	AA8	D	191	209	Right-handed alpha
Helix 9	AA9	D	227	231	Right-handed 310
Helix 10	AB1	D	272	293	Right-handed alpha
Helix 11	AB2	D	298	313	Right-handed alpha
Helix 12	AB3	D	315	319	Right-handed 310
Helix 13	AB4	E	22	40	Right-handed alpha
Helix 14	AB5	E	49	58	Right-handed alpha
Helix 15	AB6	E	84	86	Right-handed 310
Helix 16	AB7	E	87	93	Right-handed alpha
Helix 17	AB8	E	106	115	Right-handed alpha
Helix 18	AB9	E	130	141	Right-handed alpha
Helix 19	AC1	E	149	158	Right-handed alpha
Helix 20	AC2	E	161	186	Right-handed alpha
Helix 21	AC3	E	191	210	Right-handed alpha
Helix 22	AC4	E	227	231	Right-handed 310
Helix 23	AC5	E	272	293	Right-handed alpha
Helix 24	AC6	E	298	313	Right-handed alpha
Helix 25	AC7	E	315	319	Right-handed 310
Helix 26	AC8	F	22	40	Right-handed alpha
Helix 27	AC9	F	49	58	Right-handed alpha
Helix 28	AD1	F	84	86	Right-handed 310
Helix 29	AD2	F	87	93	Right-handed alpha
Helix 30	AD3	F	106	116	Right-handed alpha
Helix 31	AD4	F	130	141	Right-handed alpha
Helix 32	AD5	F	149	158	Right-handed alpha
Helix 33	AD6	F	161	185	Right-handed alpha
Helix 34	AD7	F	191	209	Right-handed alpha
Helix 35	AD8	F	227	231	Right-handed 310
Helix 36	AD9	F	272	292	Right-handed alpha
Helix 37	AE1	F	298	313	Right-handed alpha
Helix 38	AE2	F	314	319	Right-handed 310
Helix 39	AE3	A	22	40	Right-handed alpha
Helix 40	AE4	A	49	58	Right-handed alpha
Helix 41	AE5	A	84	86	Right-handed 310
Helix 42	AE6	A	87	93	Right-handed alpha
Helix 43	AE7	A	106	116	Right-handed alpha
Helix 44	AE8	A	130	141	Right-handed alpha
Helix 45	AE9	A	149	158	Right-handed alpha
Helix 46	AF1	A	161	185	Right-handed alpha
Helix 47	AF2	A	191	209	Right-handed alpha
Helix 48	AF3	A	227	231	Right-handed 310
Helix 49	AF4	A	272	293	Right-handed alpha
Helix 50	AF5	A	298	313	Right-handed alpha
Helix 51	AF6	A	315	319	Right-handed 310
Helix 52	AF7	B	22	40	Right-handed alpha
Helix 53	AF8	B	49	58	Right-handed alpha
Helix 54	AF9	B	87	93	Right-handed alpha
Helix 55	AG1	B	106	116	Right-handed alpha
Helix 56	AG2	B	130	141	Right-handed alpha
Helix 57	AG3	B	149	158	Right-handed alpha
Helix 58	AG4	B	161	185	Right-handed alpha
Helix 59	AG5	B	191	209	Right-handed alpha
Helix 60	AG6	B	227	231	Right-handed 310
Helix 61	AG7	B	272	293	Right-handed alpha
Helix 62	AG8	B	298	313	Right-handed alpha
Helix 63	AG9	B	315	319	Right-handed 310
Helix 64	AH1	C	22	40	Right-handed alpha
Helix 65	AH2	C	49	58	Right-handed alpha
Helix 66	AH3	C	84	86	Right-handed 310
Helix 67	AH4	C	87	93	Right-handed alpha
Helix 68	AH5	C	106	115	Right-handed alpha
Helix 69	AH6	C	130	141	Right-handed alpha
Helix 70	AH7	C	149	158	Right-handed alpha
Helix 71	AH8	C	161	186	Right-handed alpha
Helix 72	AH9	C	191	209	Right-handed alpha
Helix 73	AI1	C	227	231	Right-handed 310
Helix 74	AI2	C	272	293	Right-handed alpha
Helix 75	AI3	C	298	313	Right-handed alpha
Helix 76	AI4	C	315	319	Right-handed 310

There are 36 sheets in PDB entry 7YTO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	9	first strand
Strand 2	D	96	100	anti-parallel
Strand 3	D	77	82	parallel
Strand 4	D	69	72	anti-parallel
Strand 5	D	44	47	anti-parallel
Strand 6	D	121	124	parallel
Strand 7	D	145	148	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	221	first strand
Strand 2	D	246	252	anti-parallel
Strand 3	D	224	225	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	221	first strand
Strand 2	D	246	252	anti-parallel
Strand 3	D	262	267	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	255	first strand
Strand 2	D	258	259	anti-parallel
Strand 3	D	328	329	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	355	358	first strand
Strand 2	D	378	382	anti-parallel
Strand 3	D	387	389	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	361	364	first strand
Strand 2	D	372	375	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	9	first strand
Strand 2	E	96	100	anti-parallel
Strand 3	E	77	82	parallel
Strand 4	E	69	72	anti-parallel
Strand 5	E	44	47	anti-parallel
Strand 6	E	121	124	parallel
Strand 7	E	145	148	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	221	first strand
Strand 2	E	246	252	anti-parallel
Strand 3	E	224	225	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	221	first strand
Strand 2	E	246	252	anti-parallel
Strand 3	E	262	268	anti-parallel
Strand 4	E	401	402	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	254	255	first strand
Strand 2	E	258	259	anti-parallel
Strand 3	E	328	329	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	355	358	first strand
Strand 2	E	378	382	anti-parallel
Strand 3	E	387	389	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	361	364	first strand
Strand 2	E	372	375	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	9	first strand
Strand 2	F	96	100	anti-parallel
Strand 3	F	77	82	parallel
Strand 4	F	69	72	anti-parallel
Strand 5	F	44	47	anti-parallel
Strand 6	F	121	124	parallel
Strand 7	F	145	148	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	220	221	first strand
Strand 2	F	246	252	anti-parallel
Strand 3	F	224	225	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	220	221	first strand
Strand 2	F	246	252	anti-parallel
Strand 3	F	262	268	anti-parallel
Strand 4	F	401	402	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	254	255	first strand
Strand 2	F	258	259	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	355	358	first strand
Strand 2	F	378	381	anti-parallel
Strand 3	F	388	389	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	361	364	first strand
Strand 2	F	372	375	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	A	96	100	anti-parallel
Strand 3	A	77	82	parallel
Strand 4	A	69	73	anti-parallel
Strand 5	A	44	47	anti-parallel
Strand 6	A	121	124	parallel
Strand 7	A	145	148	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	B	236	237	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	246	252	anti-parallel
Strand 3	A	224	225	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	246	252	anti-parallel
Strand 3	A	262	268	anti-parallel
Strand 4	A	401	402	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	255	first strand
Strand 2	A	258	259	anti-parallel
Strand 3	A	328	331	anti-parallel
Strand 4	A	334	335	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	358	first strand
Strand 2	A	378	382	anti-parallel
Strand 3	A	387	389	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	364	first strand
Strand 2	A	372	375	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	96	100	anti-parallel
Strand 3	B	77	82	parallel
Strand 4	B	69	73	anti-parallel
Strand 5	B	44	47	anti-parallel
Strand 6	B	121	124	parallel
Strand 7	B	145	148	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	225	first strand
Strand 2	B	246	252	anti-parallel
Strand 3	B	262	267	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	255	first strand
Strand 2	B	258	259	anti-parallel
Strand 3	B	328	329	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	358	first strand
Strand 2	B	378	382	anti-parallel
Strand 3	B	387	389	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	364	first strand
Strand 2	B	372	375	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	9	first strand
Strand 2	C	96	100	anti-parallel
Strand 3	C	77	82	parallel
Strand 4	C	69	72	anti-parallel
Strand 5	C	44	47	anti-parallel
Strand 6	C	121	124	parallel
Strand 7	C	145	148	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	221	first strand
Strand 2	C	246	252	anti-parallel
Strand 3	C	224	225	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	221	first strand
Strand 2	C	246	252	anti-parallel
Strand 3	C	262	267	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	255	first strand
Strand 2	C	258	259	anti-parallel
Strand 3	C	328	329	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	358	first strand
Strand 2	C	378	382	anti-parallel
Strand 3	C	387	389	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	364	first strand
Strand 2	C	372	375	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YTO

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YTO