Analysis of interatomic Contacts of Structural Units in PDB entry:
7YTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YTP entry

There are 2 chains in PDB entry 7YTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 32LEU 828
B
 LYS 32LEU 828
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 7YTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
164 169Right-handed alpha
Helix 2
AA2
A
170 172Right-handed 310
Helix 3
AA3
A
273 277Right-handed 310
Helix 4
AA4
A
306 311Right-handed 310
Helix 5
AA5
A
326 333Right-handed alpha
Helix 6
AA6
A
334 339Right-handed 310
Helix 7
AA7
A
363 369Right-handed 310
Helix 8
AA8
A
387 396Right-handed 310
Helix 9
AA9
A
414 419Right-handed 310
Helix 10
AB1
A
490 494Right-handed 310
Helix 11
AB2
A
576 582Right-handed alpha
Helix 12
AB3
A
588 593Right-handed 310
Helix 13
AB4
A
630 635Right-handed alpha
Helix 14
AB5
A
669 673Right-handed 310
Helix 15
AB6
A
692 698Right-handed 310
Helix 16
AB7
A
717 722Right-handed alpha
Helix 17
AB8
A
768 773Right-handed alpha
Helix 18
AB9
A
788 790Right-handed 310
Helix 19
AC1
A
791 799Right-handed alpha
Helix 20
AC2
A
817 821Right-handed 310
Helix 21
AC3
B
164 169Right-handed alpha
Helix 22
AC4
B
170 172Right-handed 310
Helix 23
AC5
B
273 277Right-handed 310
Helix 24
AC6
B
306 311Right-handed 310
Helix 25
AC7
B
326 333Right-handed alpha
Helix 26
AC8
B
334 339Right-handed 310
Helix 27
AC9
B
363 369Right-handed 310
Helix 28
AD1
B
387 396Right-handed 310
Helix 29
AD2
B
414 419Right-handed 310
Helix 30
AD3
B
490 494Right-handed 310
Helix 31
AD4
B
576 582Right-handed alpha
Helix 32
AD5
B
588 593Right-handed 310
Helix 33
AD6
B
630 635Right-handed alpha
Helix 34
AD7
B
669 673Right-handed 310
Helix 35
AD8
B
692 698Right-handed 310
Helix 36
AD9
B
717 722Right-handed alpha
Helix 37
AE1
B
768 773Right-handed alpha
Helix 38
AE2
B
788 790Right-handed 310
Helix 39
AE3
B
791 799Right-handed alpha
Helix 40
AE4
B
817 821Right-handed 310
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There are 13 sheets in PDB entry 7YTP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 25 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
46 50anti-parallel
Strand 3
A
69 71parallel
Strand 4
A
93 95parallel
Strand 5
A
131 133parallel
Strand 6
A
152 154parallel
Strand 7
A
176 178parallel
Strand 8
A
208 210parallel
Strand 9
A
229 231parallel
Strand 10
A
253 255parallel
Strand 11
A
294 296parallel
Strand 12
A
318 320parallel
Strand 13
A
344 346parallel
Strand 14
A
374 376parallel
Strand 15
A
401 403parallel
Strand 16
A
425 427parallel
Strand 17
A
497 499parallel
Strand 18
A
521 523parallel
Strand 19
A
546 548parallel
Strand 20
A
570 572parallel
Strand 21
A
600 602parallel
Strand 22
A
623 625parallel
Strand 23
A
654 656parallel
Strand 24
A
679 681parallel
Strand 25
A
703 705parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
117 118parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
194 195parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 385first strand
Strand 2
A
411 412parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 532first strand
Strand 2
A
553 555parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 753first strand
Strand 2
A
777 779parallel
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There are 14 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 41first strand
Strand 2
B
46 50anti-parallel
Strand 3
B
69 71parallel
Strand 4
B
93 95parallel
Strand 5
B
131 133parallel
Strand 6
B
152 154parallel
Strand 7
B
176 178parallel
Strand 8
B
208 210parallel
Strand 9
B
229 231parallel
Strand 10
B
253 255parallel
Strand 11
B
294 296parallel
Strand 12
B
318 320parallel
Strand 13
B
344 346parallel
Strand 14
B
374 376parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 80first strand
Strand 2
B
117 118parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
194 195parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 385first strand
Strand 2
B
411 412parallel
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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 403first strand
Strand 2
B
425 427parallel
Strand 3
B
497 499parallel
Strand 4
B
521 523parallel
Strand 5
B
546 548parallel
Strand 6
B
570 572parallel
Strand 7
B
600 602parallel
Strand 8
B
623 625parallel
Strand 9
B
654 656parallel
Strand 10
B
679 681parallel
Strand 11
B
703 705parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
530 532first strand
Strand 2
B
553 555parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
751 753first strand
Strand 2
B
777 779parallel
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