Analysis of interatomic Contacts of Structural Units in PDB entry:
7YTQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YTQ entry

There are 5 chains in PDB entry 7YTQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 190PRO 325
B
 VAL 195PRO 325
C
 GLY 198PRO 325
D
 GLY 198SER 326
E
 SER 399TRP 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 7YTQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
190 197Right-handed alpha
Helix 2
AA2
A
215 226Right-handed alpha
Helix 3
AA3
A
235 247Right-handed alpha
Helix 4
AA4
A
273 278Right-handed alpha
Helix 5
AA5
A
279 281Right-handed 310
Helix 6
AA6
A
288 292Right-handed 310
Helix 7
AA7
B
215 226Right-handed alpha
Helix 8
AA8
B
235 247Right-handed alpha
Helix 9
AA9
B
273 278Right-handed alpha
Helix 10
AB1
B
279 281Right-handed 310
Helix 11
AB2
B
288 292Right-handed 310
Helix 12
AB3
C
215 226Right-handed alpha
Helix 13
AB4
C
235 247Right-handed alpha
Helix 14
AB5
C
273 278Right-handed alpha
Helix 15
AB6
C
279 281Right-handed 310
Helix 16
AB7
C
288 292Right-handed 310
Helix 17
AB8
D
215 226Right-handed alpha
Helix 18
AB9
D
235 247Right-handed alpha
Helix 19
AC1
D
273 278Right-handed alpha
Helix 20
AC2
D
279 281Right-handed 310
Helix 21
AC3
D
288 292Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 7YTQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
205 209anti-parallel
Strand 3
A
316 322anti-parallel
Strand 4
A
251 258parallel
Strand 5
A
263 266anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
316 322anti-parallel
Strand 3
A
251 258parallel
Strand 4
A
295 298anti-parallel
Strand 5
A
306 309anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 202first strand
Strand 2
B
205 209anti-parallel
Strand 3
B
316 322anti-parallel
Strand 4
B
251 258parallel
Strand 5
B
263 266anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 230first strand
Strand 2
B
316 322anti-parallel
Strand 3
B
251 258parallel
Strand 4
B
295 298anti-parallel
Strand 5
B
306 309anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
200 202first strand
Strand 2
C
205 209anti-parallel
Strand 3
C
316 322anti-parallel
Strand 4
C
251 258parallel
Strand 5
C
263 266anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 230first strand
Strand 2
C
316 322anti-parallel
Strand 3
C
251 258parallel
Strand 4
C
295 298anti-parallel
Strand 5
C
306 309anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
200 202first strand
Strand 2
D
205 209anti-parallel
Strand 3
D
316 322anti-parallel
Strand 4
D
251 258parallel
Strand 5
D
263 266anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
229 230first strand
Strand 2
D
316 322anti-parallel
Strand 3
D
251 258parallel
Strand 4
D
295 298anti-parallel
Strand 5
D
306 309anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il