Analysis of interatomic Contacts of Structural Units in PDB entry:
7YUA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YUA entry

There are 4 chains in PDB entry 7YUA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 5	THR 376
B	ASP 5	THR 376
C	ASP 5	THR 376
D	ASP 5	THR 376

There are 60 helices in PDB entry 7YUA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	32	Right-handed alpha
Helix 2	AA2	A	45	57	Right-handed alpha
Helix 3	AA3	A	65	76	Right-handed alpha
Helix 4	AA4	A	86	88	Right-handed 310
Helix 5	AA5	A	89	100	Right-handed alpha
Helix 6	AA6	A	118	124	Right-handed alpha
Helix 7	AA7	A	125	128	Right-handed 310
Helix 8	AA8	A	144	147	Right-handed 310
Helix 9	AA9	A	165	170	Right-handed alpha
Helix 10	AB1	A	197	205	Right-handed alpha
Helix 11	AB2	A	237	242	Right-handed 310
Helix 12	AB3	A	258	274	Right-handed alpha
Helix 13	AB4	A	293	318	Right-handed alpha
Helix 14	AB5	A	324	343	Right-handed alpha
Helix 15	AB6	A	349	375	Right-handed alpha
Helix 16	AB7	B	19	31	Right-handed alpha
Helix 17	AB8	B	45	57	Right-handed alpha
Helix 18	AB9	B	65	76	Right-handed alpha
Helix 19	AC1	B	86	88	Right-handed 310
Helix 20	AC2	B	89	100	Right-handed alpha
Helix 21	AC3	B	118	124	Right-handed alpha
Helix 22	AC4	B	125	128	Right-handed 310
Helix 23	AC5	B	144	147	Right-handed 310
Helix 24	AC6	B	165	170	Right-handed alpha
Helix 25	AC7	B	197	205	Right-handed alpha
Helix 26	AC8	B	237	241	Right-handed 310
Helix 27	AC9	B	258	274	Right-handed alpha
Helix 28	AD1	B	293	318	Right-handed alpha
Helix 29	AD2	B	324	343	Right-handed alpha
Helix 30	AD3	B	349	376	Right-handed alpha
Helix 31	AD4	C	20	31	Right-handed alpha
Helix 32	AD5	C	45	57	Right-handed alpha
Helix 33	AD6	C	65	76	Right-handed alpha
Helix 34	AD7	C	86	88	Right-handed 310
Helix 35	AD8	C	89	100	Right-handed alpha
Helix 36	AD9	C	118	124	Right-handed alpha
Helix 37	AE1	C	125	128	Right-handed 310
Helix 38	AE2	C	144	147	Right-handed 310
Helix 39	AE3	C	168	172	Right-handed 310
Helix 40	AE4	C	197	205	Right-handed alpha
Helix 41	AE5	C	236	242	Right-handed 310
Helix 42	AE6	C	258	274	Right-handed alpha
Helix 43	AE7	C	293	317	Right-handed alpha
Helix 44	AE8	C	324	343	Right-handed alpha
Helix 45	AE9	C	349	375	Right-handed alpha
Helix 46	AF1	D	20	31	Right-handed alpha
Helix 47	AF2	D	45	58	Right-handed alpha
Helix 48	AF3	D	65	76	Right-handed alpha
Helix 49	AF4	D	86	88	Right-handed 310
Helix 50	AF5	D	89	101	Right-handed alpha
Helix 51	AF6	D	118	124	Right-handed alpha
Helix 52	AF7	D	125	128	Right-handed 310
Helix 53	AF8	D	144	147	Right-handed 310
Helix 54	AF9	D	168	172	Right-handed 310
Helix 55	AG1	D	197	205	Right-handed alpha
Helix 56	AG2	D	236	241	Right-handed 310
Helix 57	AG3	D	258	274	Right-handed alpha
Helix 58	AG4	D	293	317	Right-handed alpha
Helix 59	AG5	D	324	343	Right-handed alpha
Helix 60	AG6	D	349	375	Right-handed alpha

There are 20 sheets in PDB entry 7YUA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	34	39	parallel
Strand 3	A	8	14	parallel
Strand 4	A	104	108	parallel
Strand 5	A	230	234	anti-parallel
Strand 6	A	183	192	anti-parallel
Strand 7	A	277	287	parallel
Strand 8	A	113	114	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	34	39	parallel
Strand 3	A	8	14	parallel
Strand 4	A	104	108	parallel
Strand 5	A	230	234	anti-parallel
Strand 6	A	183	192	anti-parallel
Strand 7	A	277	287	parallel
Strand 8	A	216	217	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	138	first strand
Strand 2	A	174	181	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	151	first strand
Strand 2	A	208	211	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	253	254	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	34	39	parallel
Strand 3	B	8	14	parallel
Strand 4	B	104	108	parallel
Strand 5	B	230	234	anti-parallel
Strand 6	B	183	192	anti-parallel
Strand 7	B	277	287	parallel
Strand 8	B	113	114	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	34	39	parallel
Strand 3	B	8	14	parallel
Strand 4	B	104	108	parallel
Strand 5	B	230	234	anti-parallel
Strand 6	B	183	192	anti-parallel
Strand 7	B	277	287	parallel
Strand 8	B	216	217	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	138	first strand
Strand 2	B	174	181	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	208	211	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	253	254	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	34	38	parallel
Strand 3	C	8	13	parallel
Strand 4	C	104	108	parallel
Strand 5	C	230	234	anti-parallel
Strand 6	C	183	192	anti-parallel
Strand 7	C	277	287	parallel
Strand 8	C	113	114	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	34	38	parallel
Strand 3	C	8	13	parallel
Strand 4	C	104	108	parallel
Strand 5	C	230	234	anti-parallel
Strand 6	C	183	192	anti-parallel
Strand 7	C	277	287	parallel
Strand 8	C	216	217	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	138	first strand
Strand 2	C	174	181	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	151	first strand
Strand 2	C	208	211	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	250	first strand
Strand 2	C	253	254	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	34	39	parallel
Strand 3	D	8	14	parallel
Strand 4	D	104	108	parallel
Strand 5	D	230	234	anti-parallel
Strand 6	D	183	192	anti-parallel
Strand 7	D	277	287	parallel
Strand 8	D	113	114	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	34	39	parallel
Strand 3	D	8	14	parallel
Strand 4	D	104	108	parallel
Strand 5	D	230	234	anti-parallel
Strand 6	D	183	192	anti-parallel
Strand 7	D	277	287	parallel
Strand 8	D	216	217	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	138	first strand
Strand 2	D	174	181	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	151	first strand
Strand 2	D	208	211	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	250	first strand
Strand 2	D	253	254	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YUA

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YUA