Analysis of interatomic Contacts of Structural Units in PDB entry:
7YUI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YUI entry

There are 2 chains in PDB entry 7YUI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLY 304
B
 GLU 193ASN 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7YUI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 35Right-handed alpha
Helix 2
AA2
A
37 39Right-handed 310
Helix 3
AA3
A
98 111Right-handed alpha
Helix 4
AA4
A
113 115Right-handed 310
Helix 5
AA5
A
174 187Right-handed alpha
Helix 6
AA6
A
189 191Right-handed 310
Helix 7
AA7
A
208 212Right-handed 310
Helix 8
AA8
A
250 263Right-handed alpha
Helix 9
AA9
A
265 267Right-handed 310
Helix 10
AB1
B
233 268Right-handed alpha
Helix 11
AB2
B
269 271Right-handed 310
Helix 12
AB3
B
305 315Right-handed alpha
Helix 13
AB4
B
337 345Right-handed alpha
Helix 14
AB5
B
346 365Right-handed alpha
Helix 15
AB6
B
410 422Right-handed alpha
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There are 9 sheets in PDB entry 7YUI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 17first strand
Strand 2
A
1 6anti-parallel
Strand 3
A
66 71parallel
Strand 4
A
41 45anti-parallel
Strand 5
A
48 49anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
77 83anti-parallel
Strand 3
A
142 147parallel
Strand 4
A
117 121anti-parallel
Strand 5
A
124 125anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 168first strand
Strand 2
A
154 158anti-parallel
Strand 3
A
217 223parallel
Strand 4
A
193 197anti-parallel
Strand 5
A
200 201anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 245first strand
Strand 2
A
229 235anti-parallel
Strand 3
A
294 299parallel
Strand 4
A
269 273anti-parallel
Strand 5
A
276 277anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 198first strand
Strand 2
B
205 206anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 275first strand
Strand 2
B
295 296anti-parallel
Strand 3
B
303 304anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 281first strand
Strand 2
B
288 289anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 370first strand
Strand 2
B
379 381anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 390first strand
Strand 2
B
397 399anti-parallel
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