Analysis of interatomic Contacts of Structural Units in PDB entry:
7YUM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YUM entry

There are 4 chains in PDB entry 7YUM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 243	PRO 774
B	LEU 243	PRO 774
C	LEU 243	PRO 774
D	LEU 243	PRO 774

There are 87 helices in PDB entry 7YUM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	245	255	Right-handed alpha
Helix 2	AA2	A	259	273	Right-handed alpha
Helix 3	AA3	A	280	296	Right-handed alpha
Helix 4	AA4	A	307	315	Right-handed alpha
Helix 5	AA5	A	316	318	Right-handed 310
Helix 6	AA6	A	324	336	Right-handed alpha
Helix 7	AA7	A	360	373	Right-handed alpha
Helix 8	AA8	A	403	411	Right-handed alpha
Helix 9	AA9	A	434	444	Right-handed alpha
Helix 10	AB1	A	447	451	Right-handed 310
Helix 11	AB2	A	478	482	Right-handed 310
Helix 12	AB3	A	494	505	Right-handed alpha
Helix 13	AB4	A	505	514	Right-handed alpha
Helix 14	AB5	A	523	534	Right-handed alpha
Helix 15	AB6	A	540	560	Right-handed alpha
Helix 16	AB7	A	573	578	Right-handed alpha
Helix 17	AB8	A	631	647	Right-handed alpha
Helix 18	AB9	A	679	693	Right-handed alpha
Helix 19	AC1	A	717	728	Right-handed alpha
Helix 20	AC2	A	738	740	Right-handed 310
Helix 21	AC3	A	761	770	Right-handed alpha
Helix 22	AC4	B	244	256	Right-handed alpha
Helix 23	AC5	B	259	271	Right-handed alpha
Helix 24	AC6	B	283	296	Right-handed alpha
Helix 25	AC7	B	308	316	Right-handed alpha
Helix 26	AC8	B	325	339	Right-handed alpha
Helix 27	AC9	B	361	373	Right-handed alpha
Helix 28	AD1	B	386	390	Right-handed 310
Helix 29	AD2	B	403	412	Right-handed alpha
Helix 30	AD3	B	434	444	Right-handed alpha
Helix 31	AD4	B	447	451	Right-handed 310
Helix 32	AD5	B	494	506	Right-handed alpha
Helix 33	AD6	B	506	514	Right-handed alpha
Helix 34	AD7	B	523	535	Right-handed alpha
Helix 35	AD8	B	541	560	Right-handed alpha
Helix 36	AD9	B	573	579	Right-handed alpha
Helix 37	AE1	B	630	647	Right-handed alpha
Helix 38	AE2	B	648	652	Right-handed 310
Helix 39	AE3	B	679	693	Right-handed alpha
Helix 40	AE4	B	717	728	Right-handed alpha
Helix 41	AE5	B	738	740	Right-handed 310
Helix 42	AE6	B	742	746	Right-handed 310
Helix 43	AE7	B	747	752	Right-handed alpha
Helix 44	AE8	B	761	769	Right-handed alpha
Helix 45	AE9	C	244	256	Right-handed alpha
Helix 46	AF1	C	259	269	Right-handed alpha
Helix 47	AF2	C	281	295	Right-handed alpha
Helix 48	AF3	C	308	315	Right-handed alpha
Helix 49	AF4	C	316	318	Right-handed 310
Helix 50	AF5	C	324	338	Right-handed alpha
Helix 51	AF6	C	361	372	Right-handed alpha
Helix 52	AF7	C	403	412	Right-handed alpha
Helix 53	AF8	C	423	427	Right-handed 310
Helix 54	AF9	C	435	444	Right-handed alpha
Helix 55	AG1	C	478	482	Right-handed 310
Helix 56	AG2	C	494	515	Right-handed alpha
Helix 57	AG3	C	523	534	Right-handed alpha
Helix 58	AG4	C	540	560	Right-handed alpha
Helix 59	AG5	C	573	579	Right-handed alpha
Helix 60	AG6	C	630	647	Right-handed alpha
Helix 61	AG7	C	679	693	Right-handed alpha
Helix 62	AG8	C	717	728	Right-handed alpha
Helix 63	AG9	C	747	752	Right-handed alpha
Helix 64	AH1	C	761	770	Right-handed alpha
Helix 65	AH2	D	244	255	Right-handed alpha
Helix 66	AH3	D	259	273	Right-handed alpha
Helix 67	AH4	D	283	296	Right-handed alpha
Helix 68	AH5	D	307	316	Right-handed alpha
Helix 69	AH6	D	324	337	Right-handed alpha
Helix 70	AH7	D	360	372	Right-handed alpha
Helix 71	AH8	D	386	390	Right-handed 310
Helix 72	AH9	D	404	411	Right-handed alpha
Helix 73	AI1	D	435	444	Right-handed alpha
Helix 74	AI2	D	473	477	Right-handed 310
Helix 75	AI3	D	478	482	Right-handed 310
Helix 76	AI4	D	494	505	Right-handed alpha
Helix 77	AI5	D	505	514	Right-handed alpha
Helix 78	AI6	D	523	535	Right-handed alpha
Helix 79	AI7	D	540	560	Right-handed alpha
Helix 80	AI8	D	573	578	Right-handed alpha
Helix 81	AI9	D	630	647	Right-handed alpha
Helix 82	AJ1	D	648	652	Right-handed 310
Helix 83	AJ2	D	679	691	Right-handed alpha
Helix 84	AJ3	D	717	729	Right-handed alpha
Helix 85	AJ4	D	738	745	Right-handed 310
Helix 86	AJ5	D	747	754	Right-handed alpha
Helix 87	AJ6	D	762	769	Right-handed alpha

There are 18 sheets in PDB entry 7YUM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	354	first strand
Strand 2	A	487	489	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	422	first strand
Strand 2	A	466	470	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	522	first strand
Strand 2	A	567	569	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	596	603	first strand
Strand 2	A	606	618	anti-parallel
Strand 3	A	661	666	anti-parallel
Strand 4	A	624	626	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	702	first strand
Strand 2	A	732	736	parallel
Strand 3	A	755	759	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	380	first strand
Strand 2	B	418	422	parallel
Strand 3	B	466	471	parallel
Strand 4	B	352	354	parallel
Strand 5	B	487	489	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	596	603	first strand
Strand 2	B	606	618	anti-parallel
Strand 3	B	661	666	anti-parallel
Strand 4	B	623	625	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	732	736	first strand
Strand 2	B	755	759	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	354	first strand
Strand 2	C	488	489	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	418	421	first strand
Strand 2	C	466	469	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	522	first strand
Strand 2	C	568	569	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	596	601	first strand
Strand 2	C	608	618	anti-parallel
Strand 3	C	661	666	anti-parallel
Strand 4	C	623	626	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	701	702	first strand
Strand 2	C	733	734	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	354	first strand
Strand 2	D	488	489	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	380	first strand
Strand 2	D	418	422	parallel
Strand 3	D	466	469	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	596	603	first strand
Strand 2	D	606	618	anti-parallel
Strand 3	D	661	666	anti-parallel
Strand 4	D	622	626	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	700	702	first strand
Strand 2	D	732	736	parallel
Strand 3	D	755	759	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	705	707	first strand
Strand 2	D	711	713	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YUM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YUM