Analysis of interatomic Contacts of Structural Units in PDB entry:
7YUP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YUP entry

There are 5 chains in PDB entry 7YUP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2	PRO 774
B	ARG 2	PRO 774
C	ARG 2	PRO 774
D	ARG 2	PRO 774
E	ARG 2	PRO 774

There are142 helices in PDB entry 7YUP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	38	Right-handed alpha
Helix 2	AA2	A	117	137	Right-handed alpha
Helix 3	AA3	A	157	169	Right-handed alpha
Helix 4	AA4	A	172	182	Right-handed alpha
Helix 5	AA5	A	185	237	Right-handed alpha
Helix 6	AA6	A	238	243	Right-handed alpha
Helix 7	AA7	A	245	254	Right-handed alpha
Helix 8	AA8	A	259	272	Right-handed alpha
Helix 9	AA9	A	276	280	Right-handed 310
Helix 10	AB1	A	283	295	Right-handed alpha
Helix 11	AB2	A	308	316	Right-handed alpha
Helix 12	AB3	A	325	337	Right-handed alpha
Helix 13	AB4	A	361	372	Right-handed alpha
Helix 14	AB5	A	388	390	Right-handed 310
Helix 15	AB6	A	403	412	Right-handed alpha
Helix 16	AB7	A	435	444	Right-handed alpha
Helix 17	AB8	A	478	483	Right-handed 310
Helix 18	AB9	A	494	506	Right-handed alpha
Helix 19	AC1	A	506	514	Right-handed alpha
Helix 20	AC2	A	523	535	Right-handed alpha
Helix 21	AC3	A	541	560	Right-handed alpha
Helix 22	AC4	A	574	579	Right-handed alpha
Helix 23	AC5	A	630	647	Right-handed alpha
Helix 24	AC6	A	679	691	Right-handed alpha
Helix 25	AC7	A	718	728	Right-handed alpha
Helix 26	AC8	A	738	740	Right-handed 310
Helix 27	AC9	A	741	745	Right-handed 310
Helix 28	AD1	A	747	754	Right-handed alpha
Helix 29	AD2	A	761	769	Right-handed alpha
Helix 30	AD3	B	30	39	Right-handed alpha
Helix 31	AD4	B	58	62	Right-handed 310
Helix 32	AD5	B	117	137	Right-handed alpha
Helix 33	AD6	B	157	169	Right-handed alpha
Helix 34	AD7	B	172	180	Right-handed alpha
Helix 35	AD8	B	185	237	Right-handed alpha
Helix 36	AD9	B	239	245	Right-handed alpha
Helix 37	AE1	B	247	255	Right-handed alpha
Helix 38	AE2	B	259	272	Right-handed alpha
Helix 39	AE3	B	283	296	Right-handed alpha
Helix 40	AE4	B	308	315	Right-handed alpha
Helix 41	AE5	B	324	338	Right-handed alpha
Helix 42	AE6	B	360	373	Right-handed alpha
Helix 43	AE7	B	403	412	Right-handed alpha
Helix 44	AE8	B	423	427	Right-handed 310
Helix 45	AE9	B	434	441	Right-handed alpha
Helix 46	AF1	B	447	450	Right-handed 310
Helix 47	AF2	B	494	506	Right-handed alpha
Helix 48	AF3	B	506	514	Right-handed alpha
Helix 49	AF4	B	524	534	Right-handed alpha
Helix 50	AF5	B	541	560	Right-handed alpha
Helix 51	AF6	B	630	647	Right-handed alpha
Helix 52	AF7	B	648	651	Right-handed 310
Helix 53	AF8	B	679	693	Right-handed alpha
Helix 54	AF9	B	717	728	Right-handed alpha
Helix 55	AG1	B	736	741	Right-handed 310
Helix 56	AG2	B	747	752	Right-handed alpha
Helix 57	AG3	C	29	39	Right-handed alpha
Helix 58	AG4	C	118	137	Right-handed alpha
Helix 59	AG5	C	146	149	Right-handed 310
Helix 60	AG6	C	150	155	Right-handed alpha
Helix 61	AG7	C	158	168	Right-handed alpha
Helix 62	AG8	C	172	181	Right-handed alpha
Helix 63	AG9	C	184	235	Right-handed alpha
Helix 64	AH1	C	237	242	Right-handed alpha
Helix 65	AH2	C	244	254	Right-handed alpha
Helix 66	AH3	C	259	272	Right-handed alpha
Helix 67	AH4	C	283	295	Right-handed alpha
Helix 68	AH5	C	307	318	Right-handed alpha
Helix 69	AH6	C	324	336	Right-handed alpha
Helix 70	AH7	C	360	372	Right-handed alpha
Helix 71	AH8	C	386	390	Right-handed 310
Helix 72	AH9	C	403	412	Right-handed alpha
Helix 73	AI1	C	435	444	Right-handed alpha
Helix 74	AI2	C	447	450	Right-handed 310
Helix 75	AI3	C	478	483	Right-handed 310
Helix 76	AI4	C	494	506	Right-handed alpha
Helix 77	AI5	C	506	514	Right-handed alpha
Helix 78	AI6	C	524	535	Right-handed alpha
Helix 79	AI7	C	540	560	Right-handed alpha
Helix 80	AI8	C	586	590	Right-handed 310
Helix 81	AI9	C	631	647	Right-handed alpha
Helix 82	AJ1	C	648	651	Right-handed 310
Helix 83	AJ2	C	679	693	Right-handed alpha
Helix 84	AJ3	C	717	728	Right-handed alpha
Helix 85	AJ4	C	738	740	Right-handed 310
Helix 86	AJ5	C	749	753	Right-handed 310
Helix 87	AJ6	C	764	769	Right-handed alpha
Helix 88	AJ7	D	30	39	Right-handed alpha
Helix 89	AJ8	D	58	62	Right-handed 310
Helix 90	AJ9	D	117	137	Right-handed alpha
Helix 91	AK1	D	145	149	Right-handed 310
Helix 92	AK2	D	157	168	Right-handed alpha
Helix 93	AK3	D	172	182	Right-handed alpha
Helix 94	AK4	D	185	237	Right-handed alpha
Helix 95	AK5	D	239	256	Right-handed alpha
Helix 96	AK6	D	259	273	Right-handed alpha
Helix 97	AK7	D	283	295	Right-handed alpha
Helix 98	AK8	D	307	315	Right-handed alpha
Helix 99	AK9	D	316	318	Right-handed 310
Helix 100	AL1	D	324	336	Right-handed alpha
Helix 101	AL2	D	361	372	Right-handed alpha
Helix 102	AL3	D	403	412	Right-handed alpha
Helix 103	AL4	D	434	444	Right-handed alpha
Helix 104	AL5	D	447	451	Right-handed 310
Helix 105	AL6	D	478	483	Right-handed alpha
Helix 106	AL7	D	494	514	Right-handed alpha
Helix 107	AL8	D	523	535	Right-handed alpha
Helix 108	AL9	D	541	560	Right-handed alpha
Helix 109	AM1	D	573	577	Right-handed 310
Helix 110	AM2	D	630	646	Right-handed alpha
Helix 111	AM3	D	656	660	Right-handed 310
Helix 112	AM4	D	679	693	Right-handed alpha
Helix 113	AM5	D	717	728	Right-handed alpha
Helix 114	AM6	D	736	740	Right-handed 310
Helix 115	AM7	D	742	746	Right-handed 310
Helix 116	AM8	E	30	40	Right-handed alpha
Helix 117	AM9	E	117	138	Right-handed alpha
Helix 118	AN1	E	157	166	Right-handed alpha
Helix 119	AN2	E	172	181	Right-handed alpha
Helix 120	AN3	E	185	236	Right-handed alpha
Helix 121	AN4	E	247	256	Right-handed alpha
Helix 122	AN5	E	259	272	Right-handed alpha
Helix 123	AN6	E	280	295	Right-handed alpha
Helix 124	AN7	E	307	316	Right-handed alpha
Helix 125	AN8	E	324	337	Right-handed alpha
Helix 126	AN9	E	338	343	Right-handed 310
Helix 127	AO1	E	360	372	Right-handed alpha
Helix 128	AO2	E	403	412	Right-handed alpha
Helix 129	AO3	E	423	427	Right-handed 310
Helix 130	AO4	E	435	444	Right-handed alpha
Helix 131	AO5	E	478	483	Right-handed 310
Helix 132	AO6	E	494	514	Right-handed alpha
Helix 133	AO7	E	523	534	Right-handed alpha
Helix 134	AO8	E	540	560	Right-handed alpha
Helix 135	AO9	E	573	578	Right-handed alpha
Helix 136	AP1	E	630	647	Right-handed alpha
Helix 137	AP2	E	656	659	Right-handed 310
Helix 138	AP3	E	679	691	Right-handed alpha
Helix 139	AP4	E	717	726	Right-handed alpha
Helix 140	AP5	E	738	743	Right-handed 310
Helix 141	AP6	E	747	752	Right-handed alpha
Helix 142	AP7	E	762	768	Right-handed alpha

There are 34 sheets in PDB entry 7YUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	93	first strand
Strand 2	A	65	69	anti-parallel
Strand 3	A	44	47	anti-parallel
Strand 4	A	5	9	parallel
Strand 5	A	104	105	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	23	first strand
Strand 2	A	84	87	anti-parallel
Strand 3	A	71	74	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	352	354	parallel
Strand 3	A	487	489	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	386	first strand
Strand 2	A	427	431	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	596	601	first strand
Strand 2	A	608	615	anti-parallel
Strand 3	A	664	666	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	702	first strand
Strand 2	A	733	736	parallel
Strand 3	A	756	759	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	105	109	anti-parallel
Strand 3	B	93	97	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	23	first strand
Strand 2	B	82	91	anti-parallel
Strand 3	B	66	76	anti-parallel
Strand 4	B	46	47	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	452	first strand
Strand 2	B	459	460	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	608	613	first strand
Strand 2	B	596	601	anti-parallel
Strand 3	B	700	702	parallel
Strand 4	B	732	734	parallel
Strand 5	B	755	756	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	623	626	first strand
Strand 2	B	663	666	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	705	706	first strand
Strand 2	B	712	713	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	104	105	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	10	first strand
Strand 2	C	43	48	parallel
Strand 3	C	67	71	anti-parallel
Strand 4	C	85	91	anti-parallel
Strand 5	C	20	22	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	82	83	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	354	first strand
Strand 2	C	487	489	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	377	378	first strand
Strand 2	C	419	420	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	452	first strand
Strand 2	C	459	460	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	520	522	first strand
Strand 2	C	567	569	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	598	601	first strand
Strand 2	C	608	611	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	614	615	first strand
Strand 2	C	664	665	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	700	702	first strand
Strand 2	C	732	736	parallel
Strand 3	C	755	759	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	25	first strand
Strand 2	D	82	97	anti-parallel
Strand 3	D	103	111	anti-parallel
Strand 4	D	3	9	anti-parallel
Strand 5	D	44	47	parallel
Strand 6	D	65	75	anti-parallel
Strand 7	D	82	97	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	380	first strand
Strand 2	D	418	422	parallel
Strand 3	D	466	470	parallel
Strand 4	D	352	354	parallel
Strand 5	D	487	489	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	520	522	first strand
Strand 2	D	567	569	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	596	597	first strand
Strand 2	D	612	616	anti-parallel
Strand 3	D	662	666	anti-parallel
Strand 4	D	622	626	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	602	603	first strand
Strand 2	D	606	607	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	706	707	first strand
Strand 2	D	711	712	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	25	first strand
Strand 2	E	82	87	anti-parallel
Strand 3	E	65	73	anti-parallel
Strand 4	E	43	44	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	25	first strand
Strand 2	E	82	87	anti-parallel
Strand 3	E	65	73	anti-parallel
Strand 4	E	90	98	anti-parallel
Strand 5	E	104	110	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	469	470	first strand
Strand 2	E	352	354	parallel
Strand 3	E	488	489	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	379	first strand
Strand 2	E	418	421	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	596	601	first strand
Strand 2	E	608	618	anti-parallel
Strand 3	E	661	666	anti-parallel
Strand 4	E	624	626	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	700	702	first strand
Strand 2	E	732	736	parallel
Strand 3	E	757	759	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YUP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YUP