Analysis of interatomic Contacts of Structural Units in PDB entry:
7YUU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YUU entry

There are 3 chains in PDB entry 7YUU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 243PRO 774
B
 LEU 243PRO 774
C
 LEU 243PRO 774
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 7YUU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
243 251Right-handed alpha
Helix 2
AA2
A
251 256Right-handed alpha
Helix 3
AA3
A
259 273Right-handed alpha
Helix 4
AA4
A
280 294Right-handed alpha
Helix 5
AA5
A
308 316Right-handed alpha
Helix 6
AA6
A
325 338Right-handed alpha
Helix 7
AA7
A
360 372Right-handed alpha
Helix 8
AA8
A
403 412Right-handed alpha
Helix 9
AA9
A
423 427Right-handed 310
Helix 10
AB1
A
434 443Right-handed alpha
Helix 11
AB2
A
447 451Right-handed 310
Helix 12
AB3
A
479 483Right-handed 310
Helix 13
AB4
A
494 505Right-handed alpha
Helix 14
AB5
A
505 514Right-handed alpha
Helix 15
AB6
A
523 534Right-handed alpha
Helix 16
AB7
A
540 560Right-handed alpha
Helix 17
AB8
A
573 578Right-handed alpha
Helix 18
AB9
A
630 647Right-handed alpha
Helix 19
AC1
A
647 652Right-handed alpha
Helix 20
AC2
A
679 693Right-handed alpha
Helix 21
AC3
A
717 728Right-handed alpha
Helix 22
AC4
A
736 744Right-handed 310
Helix 23
AC5
A
747 752Right-handed alpha
Helix 24
AC6
A
761 770Right-handed alpha
Helix 25
AC7
B
244 255Right-handed alpha
Helix 26
AC8
B
259 273Right-handed alpha
Helix 27
AC9
B
283 296Right-handed alpha
Helix 28
AD1
B
307 315Right-handed alpha
Helix 29
AD2
B
325 339Right-handed alpha
Helix 30
AD3
B
343 347Right-handed 310
Helix 31
AD4
B
360 373Right-handed alpha
Helix 32
AD5
B
403 412Right-handed alpha
Helix 33
AD6
B
435 442Right-handed alpha
Helix 34
AD7
B
473 477Right-handed 310
Helix 35
AD8
B
478 483Right-handed alpha
Helix 36
AD9
B
494 505Right-handed alpha
Helix 37
AE1
B
505 515Right-handed alpha
Helix 38
AE2
B
523 534Right-handed alpha
Helix 39
AE3
B
540 559Right-handed alpha
Helix 40
AE4
B
573 579Right-handed alpha
Helix 41
AE5
B
630 646Right-handed alpha
Helix 42
AE6
B
679 693Right-handed alpha
Helix 43
AE7
B
717 728Right-handed alpha
Helix 44
AE8
B
739 744Right-handed alpha
Helix 45
AE9
B
762 770Right-handed alpha
Helix 46
AF1
C
244 256Right-handed alpha
Helix 47
AF2
C
259 272Right-handed alpha
Helix 48
AF3
C
280 296Right-handed alpha
Helix 49
AF4
C
307 316Right-handed alpha
Helix 50
AF5
C
325 339Right-handed alpha
Helix 51
AF6
C
361 372Right-handed alpha
Helix 52
AF7
C
386 391Right-handed alpha
Helix 53
AF8
C
403 411Right-handed alpha
Helix 54
AF9
C
434 444Right-handed alpha
Helix 55
AG1
C
494 505Right-handed alpha
Helix 56
AG2
C
505 514Right-handed alpha
Helix 57
AG3
C
523 535Right-handed alpha
Helix 58
AG4
C
540 560Right-handed alpha
Helix 59
AG5
C
573 579Right-handed alpha
Helix 60
AG6
C
630 646Right-handed alpha
Helix 61
AG7
C
648 652Right-handed 310
Helix 62
AG8
C
679 693Right-handed alpha
Helix 63
AG9
C
717 729Right-handed alpha
Helix 64
AH1
C
742 746Right-handed 310
Helix 65
AH2
C
747 754Right-handed alpha
Helix 66
AH3
C
764 769Right-handed alpha
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There are 12 sheets in PDB entry 7YUU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 380first strand
Strand 2
A
418 422parallel
Strand 3
A
466 469parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 522first strand
Strand 2
A
567 569parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 603first strand
Strand 2
A
606 618anti-parallel
Strand 3
A
661 666anti-parallel
Strand 4
A
622 626parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
700 702first strand
Strand 2
A
732 735parallel
Strand 3
A
755 758parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 379first strand
Strand 2
B
417 421parallel
Strand 3
B
468 471parallel
Strand 4
B
352 354parallel
Strand 5
B
487 489parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
596 603first strand
Strand 2
B
606 617anti-parallel
Strand 3
B
662 666anti-parallel
Strand 4
B
625 626parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
700 702first strand
Strand 2
B
732 736parallel
Strand 3
B
755 759parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
375 379first strand
Strand 2
C
417 421parallel
Strand 3
C
466 471parallel
Strand 4
C
353 354parallel
Strand 5
C
488 489parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
520 522first strand
Strand 2
C
567 569parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
599 603first strand
Strand 2
C
606 610anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
613 618first strand
Strand 2
C
661 666anti-parallel
Strand 3
C
622 626parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
701 702first strand
Strand 2
C
733 734parallel
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