Analysis of interatomic Contacts of Structural Units in PDB entry:
7YUV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YUV entry

There are 4 chains in PDB entry 7YUV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 243	PRO 774
B	LEU 243	PRO 774
C	LEU 243	PRO 774
D	LEU 243	PRO 774

There are 91 helices in PDB entry 7YUV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	245	256	Right-handed alpha
Helix 2	AA2	A	259	269	Right-handed alpha
Helix 3	AA3	A	280	296	Right-handed alpha
Helix 4	AA4	A	307	317	Right-handed alpha
Helix 5	AA5	A	324	334	Right-handed alpha
Helix 6	AA6	A	360	373	Right-handed alpha
Helix 7	AA7	A	386	391	Right-handed alpha
Helix 8	AA8	A	403	412	Right-handed alpha
Helix 9	AA9	A	434	444	Right-handed alpha
Helix 10	AB1	A	446	451	Right-handed 310
Helix 11	AB2	A	479	483	Right-handed 310
Helix 12	AB3	A	494	506	Right-handed alpha
Helix 13	AB4	A	506	514	Right-handed alpha
Helix 14	AB5	A	523	535	Right-handed alpha
Helix 15	AB6	A	540	560	Right-handed alpha
Helix 16	AB7	A	570	573	Right-handed 310
Helix 17	AB8	A	574	579	Right-handed alpha
Helix 18	AB9	A	630	647	Right-handed alpha
Helix 19	AC1	A	679	693	Right-handed alpha
Helix 20	AC2	A	717	729	Right-handed alpha
Helix 21	AC3	A	739	745	Right-handed alpha
Helix 22	AC4	A	761	768	Right-handed alpha
Helix 23	AC5	B	244	256	Right-handed alpha
Helix 24	AC6	B	259	272	Right-handed alpha
Helix 25	AC7	B	284	296	Right-handed alpha
Helix 26	AC8	B	307	317	Right-handed alpha
Helix 27	AC9	B	324	339	Right-handed alpha
Helix 28	AD1	B	361	373	Right-handed alpha
Helix 29	AD2	B	386	390	Right-handed 310
Helix 30	AD3	B	403	412	Right-handed alpha
Helix 31	AD4	B	424	427	Right-handed 310
Helix 32	AD5	B	435	444	Right-handed alpha
Helix 33	AD6	B	478	483	Right-handed 310
Helix 34	AD7	B	494	505	Right-handed alpha
Helix 35	AD8	B	505	514	Right-handed alpha
Helix 36	AD9	B	523	534	Right-handed alpha
Helix 37	AE1	B	540	560	Right-handed alpha
Helix 38	AE2	B	573	579	Right-handed alpha
Helix 39	AE3	B	586	590	Right-handed 310
Helix 40	AE4	B	630	646	Right-handed alpha
Helix 41	AE5	B	679	693	Right-handed alpha
Helix 42	AE6	B	719	728	Right-handed alpha
Helix 43	AE7	B	739	744	Right-handed alpha
Helix 44	AE8	B	747	753	Right-handed alpha
Helix 45	AE9	B	761	769	Right-handed alpha
Helix 46	AF1	C	244	256	Right-handed alpha
Helix 47	AF2	C	259	271	Right-handed alpha
Helix 48	AF3	C	272	274	Right-handed 310
Helix 49	AF4	C	281	295	Right-handed alpha
Helix 50	AF5	C	309	319	Right-handed alpha
Helix 51	AF6	C	324	339	Right-handed alpha
Helix 52	AF7	C	361	372	Right-handed alpha
Helix 53	AF8	C	386	391	Right-handed alpha
Helix 54	AF9	C	403	412	Right-handed alpha
Helix 55	AG1	C	423	427	Right-handed 310
Helix 56	AG2	C	434	444	Right-handed alpha
Helix 57	AG3	C	444	449	Right-handed alpha
Helix 58	AG4	C	494	505	Right-handed alpha
Helix 59	AG5	C	505	515	Right-handed alpha
Helix 60	AG6	C	523	535	Right-handed alpha
Helix 61	AG7	C	540	560	Right-handed alpha
Helix 62	AG8	C	573	578	Right-handed alpha
Helix 63	AG9	C	586	591	Right-handed 310
Helix 64	AH1	C	630	647	Right-handed alpha
Helix 65	AH2	C	648	651	Right-handed 310
Helix 66	AH3	C	679	693	Right-handed alpha
Helix 67	AH4	C	717	728	Right-handed alpha
Helix 68	AH5	C	738	740	Right-handed 310
Helix 69	AH6	C	761	770	Right-handed alpha
Helix 70	AH7	D	244	254	Right-handed alpha
Helix 71	AH8	D	259	273	Right-handed alpha
Helix 72	AH9	D	283	295	Right-handed alpha
Helix 73	AI1	D	307	316	Right-handed alpha
Helix 74	AI2	D	325	336	Right-handed alpha
Helix 75	AI3	D	337	338	Right-handed 310
Helix 76	AI4	D	339	343	Right-handed 310
Helix 77	AI5	D	360	373	Right-handed alpha
Helix 78	AI6	D	403	411	Right-handed alpha
Helix 79	AI7	D	435	444	Right-handed alpha
Helix 80	AI8	D	478	483	Right-handed alpha
Helix 81	AI9	D	494	505	Right-handed alpha
Helix 82	AJ1	D	505	514	Right-handed alpha
Helix 83	AJ2	D	523	534	Right-handed alpha
Helix 84	AJ3	D	540	560	Right-handed alpha
Helix 85	AJ4	D	573	578	Right-handed alpha
Helix 86	AJ5	D	630	647	Right-handed alpha
Helix 87	AJ6	D	679	693	Right-handed alpha
Helix 88	AJ7	D	717	728	Right-handed alpha
Helix 89	AJ8	D	736	746	Right-handed 310
Helix 90	AJ9	D	747	754	Right-handed alpha
Helix 91	AK1	D	761	768	Right-handed alpha

There are 18 sheets in PDB entry 7YUV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	421	first strand
Strand 2	A	466	471	parallel
Strand 3	A	353	354	parallel
Strand 4	A	488	489	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	522	first strand
Strand 2	A	567	569	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	603	first strand
Strand 2	A	606	618	anti-parallel
Strand 3	A	661	666	anti-parallel
Strand 4	A	623	624	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	702	first strand
Strand 2	A	732	736	parallel
Strand 3	A	755	759	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	706	first strand
Strand 2	A	712	713	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	380	first strand
Strand 2	B	418	422	parallel
Strand 3	B	468	470	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	599	603	first strand
Strand 2	B	606	610	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	613	615	first strand
Strand 2	B	663	666	anti-parallel
Strand 3	B	623	626	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	732	736	first strand
Strand 2	B	755	759	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	380	first strand
Strand 2	C	419	422	parallel
Strand 3	C	467	471	parallel
Strand 4	C	350	354	parallel
Strand 5	C	485	487	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	520	522	first strand
Strand 2	C	567	569	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	601	603	first strand
Strand 2	C	606	608	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	613	618	first strand
Strand 2	C	661	666	anti-parallel
Strand 3	C	622	626	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	700	702	first strand
Strand 2	C	732	736	parallel
Strand 3	C	755	759	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	378	first strand
Strand 2	D	418	421	parallel
Strand 3	D	466	469	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	520	522	first strand
Strand 2	D	567	569	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	596	603	first strand
Strand 2	D	606	618	anti-parallel
Strand 3	D	661	666	anti-parallel
Strand 4	D	622	625	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	700	702	first strand
Strand 2	D	732	734	parallel
Strand 3	D	755	756	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YUV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YUV