Analysis of interatomic Contacts of Structural Units in PDB entry:
7YV0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YV0 entry

There are 2 chains in PDB entry 7YV0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5THR 376
B
 ASP 5THR 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 7YV0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 31Right-handed alpha
Helix 2
AA2
A
45 56Right-handed alpha
Helix 3
AA3
A
65 76Right-handed alpha
Helix 4
AA4
A
86 88Right-handed 310
Helix 5
AA5
A
89 101Right-handed alpha
Helix 6
AA6
A
118 124Right-handed alpha
Helix 7
AA7
A
125 127Right-handed 310
Helix 8
AA8
A
144 147Right-handed 310
Helix 9
AA9
A
166 172Right-handed 310
Helix 10
AB1
A
197 205Right-handed alpha
Helix 11
AB2
A
237 241Right-handed 310
Helix 12
AB3
A
258 274Right-handed alpha
Helix 13
AB4
A
293 316Right-handed alpha
Helix 14
AB5
A
324 343Right-handed alpha
Helix 15
AB6
A
349 376Right-handed alpha
Helix 16
AB7
B
18 23Right-handed alpha
Helix 17
AB8
B
24 31Right-handed alpha
Helix 18
AB9
B
44 57Right-handed alpha
Helix 19
AC1
B
65 76Right-handed alpha
Helix 20
AC2
B
86 88Right-handed 310
Helix 21
AC3
B
89 100Right-handed alpha
Helix 22
AC4
B
118 124Right-handed alpha
Helix 23
AC5
B
125 128Right-handed 310
Helix 24
AC6
B
144 147Right-handed 310
Helix 25
AC7
B
165 170Right-handed alpha
Helix 26
AC8
B
197 205Right-handed alpha
Helix 27
AC9
B
237 241Right-handed 310
Helix 28
AD1
B
258 274Right-handed alpha
Helix 29
AD2
B
293 316Right-handed alpha
Helix 30
AD3
B
324 343Right-handed alpha
Helix 31
AD4
B
349 375Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 7YV0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
34 39parallel
Strand 3
A
8 14parallel
Strand 4
A
104 108parallel
Strand 5
A
230 234anti-parallel
Strand 6
A
183 192anti-parallel
Strand 7
A
277 287parallel
Strand 8
A
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
34 39parallel
Strand 3
A
8 14parallel
Strand 4
A
104 108parallel
Strand 5
A
230 234anti-parallel
Strand 6
A
183 192anti-parallel
Strand 7
A
277 287parallel
Strand 8
A
216 217anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
177 181anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
210 211anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
253 254anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
34 38parallel
Strand 3
B
8 13parallel
Strand 4
B
104 108parallel
Strand 5
B
230 234anti-parallel
Strand 6
B
183 192anti-parallel
Strand 7
B
277 287parallel
Strand 8
B
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
34 38parallel
Strand 3
B
8 13parallel
Strand 4
B
104 108parallel
Strand 5
B
230 234anti-parallel
Strand 6
B
183 192anti-parallel
Strand 7
B
277 287parallel
Strand 8
B
216 217anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 138first strand
Strand 2
B
174 181anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
208 211anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 250first strand
Strand 2
B
253 254anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il