Analysis of interatomic Contacts of Structural Units in PDB entry:
7YV2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YV2 entry

There are 3 chains in PDB entry 7YV2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 73LEU 297
B
 ASN 30GLU 244
C
 GLY 1THR 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7YV2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 85Right-handed 310
Helix 2
AA2
A
168 173Right-handed 310
Helix 3
AA3
B
35 37Right-handed 310
Helix 4
AA4
B
83 87Right-handed 310
Helix 5
AA5
B
174 178Right-handed 310
Helix 6
AA6
C
42 46Right-handed 310
Helix 7
AA7
C
64 70Right-handed 310
Helix 8
AA8
C
94 98Right-handed 310
Helix 9
AA9
C
100 105Right-handed alpha
Helix 10
AB1
C
145 151Right-handed alpha
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There are 8 sheets in PDB entry 7YV2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 95first strand
Strand 2
A
247 261anti-parallel
Strand 3
A
128 140anti-parallel
Strand 4
A
189 192anti-parallel
Strand 5
C
22 23parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
128 140anti-parallel
Strand 3
A
247 261anti-parallel
Strand 4
C
39 40anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
151 156anti-parallel
Strand 4
A
178 179anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
190 195parallel
Strand 3
B
103 112anti-parallel
Strand 4
B
232 244anti-parallel
Strand 5
B
64 71anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
78 81anti-parallel
Strand 3
B
212 223anti-parallel
Strand 4
B
119 128anti-parallel
Strand 5
B
180 184anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
212 220anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
166 174anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 73first strand
Strand 2
C
212 220anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
225 229anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 86first strand
Strand 2
C
194 198anti-parallel
Strand 3
C
131 135anti-parallel
Strand 4
C
153 157anti-parallel
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