Analysis of interatomic Contacts of Structural Units in PDB entry:
7YV7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YV7 entry

There are 5 chains in PDB entry 7YV7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 73LEU 297
B
 ALA 29PHE 245
C
 GLY 1THR 232
E
 ASP 1GLU 213
F
 GLU 1LEU 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7YV7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 84Right-handed alpha
Helix 2
AA2
A
119 124Right-handed alpha
Helix 3
AA3
A
168 173Right-handed 310
Helix 4
AA4
B
35 37Right-handed 310
Helix 5
AA5
B
85 90Right-handed 310
Helix 6
AA6
B
91 96Right-handed alpha
Helix 7
AA7
B
174 178Right-handed 310
Helix 8
AA8
C
43 48Right-handed alpha
Helix 9
AA9
C
59 63Right-handed 310
Helix 10
AB1
C
64 69Right-handed 310
Helix 11
AB2
C
99 105Right-handed alpha
Helix 12
AB3
C
145 150Right-handed alpha
Helix 13
AB4
E
121 126Right-handed alpha
Helix 14
AB5
E
182 189Right-handed alpha
Helix 15
AB6
F
87 91Right-handed 310
Helix 16
AB7
F
164 166Right-handed 310
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There are 19 sheets in PDB entry 7YV7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 95first strand
Strand 2
A
247 260anti-parallel
Strand 3
A
128 140anti-parallel
Strand 4
A
201 202anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 95first strand
Strand 2
A
247 260anti-parallel
Strand 3
A
128 140anti-parallel
Strand 4
A
188 192anti-parallel
Strand 5
C
22 23parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
150 156anti-parallel
Strand 4
A
178 182anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
190 195parallel
Strand 3
B
103 112anti-parallel
Strand 4
B
232 244anti-parallel
Strand 5
B
64 65anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
190 195parallel
Strand 3
B
103 112anti-parallel
Strand 4
B
232 244anti-parallel
Strand 5
B
69 71anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
78 82anti-parallel
Strand 3
B
212 220anti-parallel
Strand 4
B
121 128anti-parallel
Strand 5
B
180 184anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
211 220anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
166 173anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 74first strand
Strand 2
C
211 220anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
225 229anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 88first strand
Strand 2
C
192 198anti-parallel
Strand 3
C
130 136anti-parallel
Strand 4
C
153 158anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
70 75anti-parallel
Strand 4
E
62 67anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
34 36first strand
Strand 2
E
46 49anti-parallel
Strand 3
E
53 54anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
85 86first strand
Strand 2
E
102 103anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
114 118first strand
Strand 2
E
130 139anti-parallel
Strand 3
E
173 181anti-parallel
Strand 4
E
159 163anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
145 150first strand
Strand 2
E
192 197anti-parallel
Strand 3
E
205 207anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 5first strand
Strand 2
F
18 25anti-parallel
Strand 3
F
78 83anti-parallel
Strand 4
F
69 73anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 12first strand
Strand 2
F
118 119parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
57 60first strand
Strand 2
F
46 52anti-parallel
Strand 3
F
32 39anti-parallel
Strand 4
F
93 101anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
128 132first strand
Strand 2
F
143 151anti-parallel
Strand 3
F
184 192anti-parallel
Strand 4
F
172 174anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
159 162first strand
Strand 2
F
202 207anti-parallel
Strand 3
F
212 217anti-parallel
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