Analysis of interatomic Contacts of Structural Units in PDB entry:
7YV9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YV9 entry

There are 15 chains in PDB entry 7YV9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	THR 1100
B	ASP 3	LYS 149
C	ASP 3	LYS 149
D	ASP 3	LYS 149
E	THR 6	LYS 149
F	ASP 3	LYS 149
G	ASP 3	LYS 149
H	SER 4	MET 1102
I	ASP 3	LYS 149
J	ASP 3	LYS 149
K	ASP 3	LYS 149
L	THR 6	LYS 149
M	ASP 3	LYS 149
N	ALA 2	LYS 149
X	PRO 1433	GLN 1447

There are191 helices in PDB entry 7YV9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	77	Right-handed 310
Helix 2	AA2	A	81	95	Right-handed alpha
Helix 3	AA3	A	116	119	Right-handed 310
Helix 4	AA4	A	120	128	Right-handed alpha
Helix 5	AA5	A	138	153	Right-handed alpha
Helix 6	AA6	A	168	185	Right-handed alpha
Helix 7	AA7	A	186	207	Right-handed alpha
Helix 8	AA8	A	246	251	Right-handed alpha
Helix 9	AA9	A	259	268	Right-handed alpha
Helix 10	AB1	A	271	278	Right-handed 310
Helix 11	AB2	A	281	285	Right-handed 310
Helix 12	AB3	A	300	315	Right-handed alpha
Helix 13	AB4	A	318	336	Right-handed alpha
Helix 14	AB5	A	354	365	Right-handed alpha
Helix 15	AB6	A	367	376	Right-handed alpha
Helix 16	AB7	A	392	424	Right-handed alpha
Helix 17	AB8	A	448	480	Right-handed alpha
Helix 18	AB9	A	492	501	Right-handed alpha
Helix 19	AC1	A	504	515	Right-handed alpha
Helix 20	AC2	A	519	532	Right-handed alpha
Helix 21	AC3	A	561	569	Right-handed alpha
Helix 22	AC4	A	573	582	Right-handed alpha
Helix 23	AC5	A	587	593	Right-handed alpha
Helix 24	AC6	A	629	633	Right-handed alpha
Helix 25	AC7	A	634	652	Right-handed alpha
Helix 26	AC8	A	673	685	Right-handed alpha
Helix 27	AC9	A	685	696	Right-handed alpha
Helix 28	AD1	A	703	710	Right-handed alpha
Helix 29	AD2	A	722	735	Right-handed alpha
Helix 30	AD3	A	753	908	Right-handed alpha
Helix 31	AD4	A	914	1100	Right-handed alpha
Helix 32	AD5	B	6	21	Right-handed alpha
Helix 33	AD6	B	29	40	Right-handed alpha
Helix 34	AD7	B	45	60	Right-handed alpha
Helix 35	AD8	B	65	79	Right-handed alpha
Helix 36	AD9	B	82	94	Right-handed alpha
Helix 37	AE1	B	102	112	Right-handed alpha
Helix 38	AE2	B	118	129	Right-handed alpha
Helix 39	AE3	B	139	148	Right-handed alpha
Helix 40	AE4	C	6	21	Right-handed alpha
Helix 41	AE5	C	29	40	Right-handed alpha
Helix 42	AE6	C	45	57	Right-handed alpha
Helix 43	AE7	C	65	76	Right-handed alpha
Helix 44	AE8	C	82	94	Right-handed alpha
Helix 45	AE9	C	103	113	Right-handed alpha
Helix 46	AF1	C	118	129	Right-handed alpha
Helix 47	AF2	C	139	149	Right-handed alpha
Helix 48	AF3	D	6	21	Right-handed alpha
Helix 49	AF4	D	30	40	Right-handed alpha
Helix 50	AF5	D	45	60	Right-handed alpha
Helix 51	AF6	D	65	78	Right-handed alpha
Helix 52	AF7	D	82	94	Right-handed alpha
Helix 53	AF8	D	103	113	Right-handed alpha
Helix 54	AF9	D	118	129	Right-handed alpha
Helix 55	AG1	D	139	149	Right-handed alpha
Helix 56	AG2	E	7	21	Right-handed alpha
Helix 57	AG3	E	30	41	Right-handed alpha
Helix 58	AG4	E	45	60	Right-handed alpha
Helix 59	AG5	E	66	79	Right-handed alpha
Helix 60	AG6	E	82	93	Right-handed alpha
Helix 61	AG7	E	102	113	Right-handed alpha
Helix 62	AG8	E	118	130	Right-handed alpha
Helix 63	AG9	E	139	149	Right-handed alpha
Helix 64	AH1	F	6	21	Right-handed alpha
Helix 65	AH2	F	29	41	Right-handed alpha
Helix 66	AH3	F	45	60	Right-handed alpha
Helix 67	AH4	F	65	79	Right-handed alpha
Helix 68	AH5	F	82	94	Right-handed alpha
Helix 69	AH6	F	103	113	Right-handed alpha
Helix 70	AH7	F	118	130	Right-handed alpha
Helix 71	AH8	F	139	149	Right-handed alpha
Helix 72	AH9	G	6	21	Right-handed alpha
Helix 73	AI1	G	29	39	Right-handed alpha
Helix 74	AI2	G	45	57	Right-handed alpha
Helix 75	AI3	G	65	78	Right-handed alpha
Helix 76	AI4	G	82	94	Right-handed alpha
Helix 77	AI5	G	102	112	Right-handed alpha
Helix 78	AI6	G	118	130	Right-handed alpha
Helix 79	AI7	G	138	149	Right-handed alpha
Helix 80	AI8	H	81	95	Right-handed alpha
Helix 81	AI9	H	116	119	Right-handed 310
Helix 82	AJ1	H	120	128	Right-handed alpha
Helix 83	AJ2	H	138	154	Right-handed alpha
Helix 84	AJ3	H	168	185	Right-handed alpha
Helix 85	AJ4	H	186	208	Right-handed alpha
Helix 86	AJ5	H	259	268	Right-handed alpha
Helix 87	AJ6	H	271	275	Right-handed 310
Helix 88	AJ7	H	281	284	Right-handed 310
Helix 89	AJ8	H	285	290	Right-handed alpha
Helix 90	AJ9	H	300	316	Right-handed alpha
Helix 91	AK1	H	318	335	Right-handed alpha
Helix 92	AK2	H	354	365	Right-handed alpha
Helix 93	AK3	H	367	375	Right-handed alpha
Helix 94	AK4	H	392	424	Right-handed alpha
Helix 95	AK5	H	448	480	Right-handed alpha
Helix 96	AK6	H	492	501	Right-handed alpha
Helix 97	AK7	H	504	515	Right-handed alpha
Helix 98	AK8	H	519	532	Right-handed alpha
Helix 99	AK9	H	561	569	Right-handed alpha
Helix 100	AL1	H	573	581	Right-handed alpha
Helix 101	AL2	H	586	593	Right-handed alpha
Helix 102	AL3	H	634	653	Right-handed alpha
Helix 103	AL4	H	673	684	Right-handed alpha
Helix 104	AL5	H	685	696	Right-handed alpha
Helix 105	AL6	H	703	710	Right-handed alpha
Helix 106	AL7	H	722	735	Right-handed alpha
Helix 107	AL8	H	752	908	Right-handed alpha
Helix 108	AL9	H	915	1102	Right-handed alpha
Helix 109	AM1	I	6	18	Right-handed alpha
Helix 110	AM2	I	32	40	Right-handed alpha
Helix 111	AM3	I	45	57	Right-handed alpha
Helix 112	AM4	I	58	60	Right-handed 310
Helix 113	AM5	I	65	79	Right-handed alpha
Helix 114	AM6	I	82	94	Right-handed alpha
Helix 115	AM7	I	102	113	Right-handed alpha
Helix 116	AM8	I	118	129	Right-handed alpha
Helix 117	AM9	I	139	147	Right-handed alpha
Helix 118	AN1	J	6	20	Right-handed alpha
Helix 119	AN2	J	29	40	Right-handed alpha
Helix 120	AN3	J	45	57	Right-handed alpha
Helix 121	AN4	J	66	76	Right-handed alpha
Helix 122	AN5	J	82	94	Right-handed alpha
Helix 123	AN6	J	103	112	Right-handed alpha
Helix 124	AN7	J	118	129	Right-handed alpha
Helix 125	AN8	J	139	147	Right-handed alpha
Helix 126	AN9	K	6	20	Right-handed alpha
Helix 127	AO1	K	29	41	Right-handed alpha
Helix 128	AO2	K	45	57	Right-handed alpha
Helix 129	AO3	K	65	80	Right-handed alpha
Helix 130	AO4	K	82	94	Right-handed alpha
Helix 131	AO5	K	102	112	Right-handed alpha
Helix 132	AO6	K	118	130	Right-handed alpha
Helix 133	AO7	K	139	149	Right-handed alpha
Helix 134	AO8	L	7	21	Right-handed alpha
Helix 135	AO9	L	30	40	Right-handed alpha
Helix 136	AP1	L	45	57	Right-handed alpha
Helix 137	AP2	L	58	60	Right-handed 310
Helix 138	AP3	L	65	80	Right-handed alpha
Helix 139	AP4	L	82	94	Right-handed alpha
Helix 140	AP5	L	103	113	Right-handed alpha
Helix 141	AP6	L	118	130	Right-handed alpha
Helix 142	AP7	L	139	149	Right-handed alpha
Helix 143	AP8	M	6	21	Right-handed alpha
Helix 144	AP9	M	30	41	Right-handed alpha
Helix 145	AQ1	M	45	60	Right-handed alpha
Helix 146	AQ2	M	65	77	Right-handed alpha
Helix 147	AQ3	M	82	94	Right-handed alpha
Helix 148	AQ4	M	103	113	Right-handed alpha
Helix 149	AQ5	M	118	127	Right-handed alpha
Helix 150	AQ6	M	138	148	Right-handed alpha
Helix 151	AQ7	N	6	21	Right-handed alpha
Helix 152	AQ8	N	29	40	Right-handed alpha
Helix 153	AQ9	N	45	60	Right-handed alpha
Helix 154	AR1	N	65	78	Right-handed alpha
Helix 155	AR2	N	82	90	Right-handed alpha
Helix 156	AR3	N	91	94	Right-handed 310
Helix 157	AR4	N	102	113	Right-handed alpha
Helix 158	AR5	N	118	130	Right-handed alpha
Helix 159	AR6	N	139	149	Right-handed alpha
Helix 160	AR7	X	1456	1465	Right-handed alpha
Helix 161	AR8	X	1472	1478	Right-handed alpha
Helix 162	AR9	X	1480	1497	Right-handed alpha
Helix 163	AS1	X	1498	1520	Right-handed alpha
Helix 164	AS2	X	1523	1545	Right-handed alpha
Helix 165	AS3	X	1547	1552	Right-handed alpha
Helix 166	AS4	X	1555	1560	Right-handed alpha
Helix 167	AS5	X	1568	1603	Right-handed alpha
Helix 168	AS6	X	1633	1652	Right-handed alpha
Helix 169	AS7	X	1654	1680	Right-handed alpha
Helix 170	AS8	X	1685	1707	Right-handed alpha
Helix 171	AS9	X	1712	1729	Right-handed alpha
Helix 172	AT1	X	1733	1744	Right-handed alpha
Helix 173	AT2	X	1748	1758	Right-handed alpha
Helix 174	AT3	X	1770	1781	Right-handed alpha
Helix 175	AT4	X	1782	1785	Right-handed 310
Helix 176	AT5	Y	1453	1465	Right-handed alpha
Helix 177	AT6	Y	1472	1478	Right-handed alpha
Helix 178	AT7	Y	1480	1497	Right-handed alpha
Helix 179	AT8	Y	1498	1521	Right-handed alpha
Helix 180	AT9	Y	1523	1544	Right-handed alpha
Helix 181	AU1	Y	1555	1561	Right-handed alpha
Helix 182	AU2	Y	1568	1603	Right-handed alpha
Helix 183	AU3	Y	1633	1651	Right-handed alpha
Helix 184	AU4	Y	1654	1680	Right-handed alpha
Helix 185	AU5	Y	1685	1706	Right-handed alpha
Helix 186	AU6	Y	1708	1711	Right-handed 310
Helix 187	AU7	Y	1712	1727	Right-handed alpha
Helix 188	AU8	Y	1733	1744	Right-handed alpha
Helix 189	AU9	Y	1748	1758	Right-handed alpha
Helix 190	AV1	Y	1770	1782	Right-handed alpha
Helix 191	AV2	Y	1783	1785	Right-handed 310

There are 28 sheets in PDB entry 7YV9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	16	first strand
Strand 2	A	22	27	anti-parallel
Strand 3	A	40	42	anti-parallel
Strand 4	A	47	48	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	106	110	anti-parallel
Strand 3	A	654	661	parallel
Strand 4	A	157	163	parallel
Strand 5	A	431	437	parallel
Strand 6	A	221	228	anti-parallel
Strand 7	A	234	242	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	217	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	381	first strand
Strand 2	A	386	390	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	539	first strand
Strand 2	A	547	551	anti-parallel
Strand 3	A	556	560	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	699	702	first strand
Strand 2	A	747	750	anti-parallel
Strand 3	A	741	742	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	137	138	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	136	138	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	29	first strand
Strand 2	D	63	64	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	136	138	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	29	first strand
Strand 2	E	63	65	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	101	first strand
Strand 2	E	137	138	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	102	first strand
Strand 2	F	136	138	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	16	first strand
Strand 2	H	22	27	anti-parallel
Strand 3	H	37	42	anti-parallel
Strand 4	H	47	51	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	103	first strand
Strand 2	H	106	110	anti-parallel
Strand 3	H	654	661	parallel
Strand 4	H	157	161	parallel
Strand 5	H	431	437	parallel
Strand 6	H	221	228	anti-parallel
Strand 7	H	234	242	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	377	381	first strand
Strand 2	H	386	390	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	538	539	first strand
Strand 2	H	547	551	anti-parallel
Strand 3	H	556	560	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	699	702	first strand
Strand 2	H	747	750	anti-parallel
Strand 3	H	741	742	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	100	101	first strand
Strand 2	I	137	138	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	27	28	first strand
Strand 2	J	64	65	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	100	102	first strand
Strand 2	J	136	138	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	100	101	first strand
Strand 2	K	137	138	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	29	first strand
Strand 2	L	63	64	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	100	102	first strand
Strand 2	L	136	138	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	28	29	first strand
Strand 2	M	63	64	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	101	102	first strand
Strand 2	M	136	137	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	100	101	first strand
Strand 2	N	137	138	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	1449	1451	first strand
Strand 2	X	1826	1828	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YV9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YV9