Analysis of interatomic Contacts of Structural Units in PDB entry:
7YVB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YVB entry

There are 6 chains in PDB entry 7YVB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 91	GLU 577
B	ARG 91	GLU 577
C	ARG 91	GLU 577
P	PHE 1	PHE 4
Q	PHE 1	PHE 4
R	PHE 1	PHE 4

There are 48 helices in PDB entry 7YVB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	91	119	Right-handed alpha
Helix 2	AA2	A	148	158	Right-handed alpha
Helix 3	AA3	A	161	172	Right-handed alpha
Helix 4	AA4	A	178	183	Right-handed alpha
Helix 5	AA5	A	184	192	Right-handed alpha
Helix 6	AA6	A	192	200	Right-handed alpha
Helix 7	AA7	A	202	206	Right-handed alpha
Helix 8	AA8	A	218	220	Right-handed 310
Helix 9	AA9	A	346	363	Right-handed alpha
Helix 10	AB1	A	386	392	Right-handed alpha
Helix 11	AB2	A	406	421	Right-handed alpha
Helix 12	AB3	A	423	428	Right-handed 310
Helix 13	AB4	A	454	467	Right-handed alpha
Helix 14	AB5	A	473	487	Right-handed alpha
Helix 15	AB6	A	509	526	Right-handed alpha
Helix 16	AB7	A	549	577	Right-handed alpha
Helix 17	AB8	B	92	119	Right-handed alpha
Helix 18	AB9	B	148	158	Right-handed alpha
Helix 19	AC1	B	161	174	Right-handed alpha
Helix 20	AC2	B	178	183	Right-handed alpha
Helix 21	AC3	B	184	192	Right-handed alpha
Helix 22	AC4	B	192	200	Right-handed alpha
Helix 23	AC5	B	202	206	Right-handed alpha
Helix 24	AC6	B	218	220	Right-handed 310
Helix 25	AC7	B	346	363	Right-handed alpha
Helix 26	AC8	B	386	392	Right-handed alpha
Helix 27	AC9	B	406	421	Right-handed alpha
Helix 28	AD1	B	423	428	Right-handed 310
Helix 29	AD2	B	454	467	Right-handed alpha
Helix 30	AD3	B	473	487	Right-handed alpha
Helix 31	AD4	B	509	526	Right-handed alpha
Helix 32	AD5	B	549	577	Right-handed alpha
Helix 33	AD6	C	92	119	Right-handed alpha
Helix 34	AD7	C	148	158	Right-handed alpha
Helix 35	AD8	C	161	172	Right-handed alpha
Helix 36	AD9	C	178	183	Right-handed alpha
Helix 37	AE1	C	184	192	Right-handed alpha
Helix 38	AE2	C	192	200	Right-handed alpha
Helix 39	AE3	C	202	206	Right-handed alpha
Helix 40	AE4	C	218	220	Right-handed 310
Helix 41	AE5	C	346	363	Right-handed alpha
Helix 42	AE6	C	386	392	Right-handed alpha
Helix 43	AE7	C	406	421	Right-handed alpha
Helix 44	AE8	C	423	428	Right-handed 310
Helix 45	AE9	C	454	467	Right-handed alpha
Helix 46	AF1	C	473	487	Right-handed alpha
Helix 47	AF2	C	509	526	Right-handed alpha
Helix 48	AF3	C	549	577	Right-handed alpha

There are 24 sheets in PDB entry 7YVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	129	first strand
Strand 2	A	539	546	anti-parallel
Strand 3	A	311	323	parallel
Strand 4	A	527	534	parallel
Strand 5	A	256	261	anti-parallel
Strand 6	A	207	212	anti-parallel
Strand 7	A	215	217	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	129	first strand
Strand 2	A	539	546	anti-parallel
Strand 3	A	311	323	parallel
Strand 4	A	436	448	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	246	247	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	226	first strand
Strand 2	A	232	236	anti-parallel
Strand 3	A	138	143	anti-parallel
Strand 4	A	287	292	anti-parallel
Strand 5	A	305	307	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	176	first strand
Strand 2	A	403	404	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	273	first strand
Strand 2	P	2	3	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	343	344	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	379	380	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	129	first strand
Strand 2	B	539	546	anti-parallel
Strand 3	B	311	323	parallel
Strand 4	B	527	534	parallel
Strand 5	B	256	261	anti-parallel
Strand 6	B	207	212	anti-parallel
Strand 7	B	215	217	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	129	first strand
Strand 2	B	539	546	anti-parallel
Strand 3	B	311	323	parallel
Strand 4	B	436	448	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	246	247	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	226	first strand
Strand 2	B	232	236	anti-parallel
Strand 3	B	138	143	anti-parallel
Strand 4	B	287	292	anti-parallel
Strand 5	B	305	307	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	176	first strand
Strand 2	B	403	404	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	273	first strand
Strand 2	Q	2	3	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	337	first strand
Strand 2	B	343	344	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	366	first strand
Strand 2	B	379	380	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	129	first strand
Strand 2	C	539	546	anti-parallel
Strand 3	C	311	323	parallel
Strand 4	C	527	534	parallel
Strand 5	C	256	261	anti-parallel
Strand 6	C	207	212	anti-parallel
Strand 7	C	215	217	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	129	first strand
Strand 2	C	539	546	anti-parallel
Strand 3	C	311	323	parallel
Strand 4	C	436	448	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	135	first strand
Strand 2	C	246	247	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	226	first strand
Strand 2	C	232	236	anti-parallel
Strand 3	C	138	143	anti-parallel
Strand 4	C	287	292	anti-parallel
Strand 5	C	305	307	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	403	404	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	273	first strand
Strand 2	R	2	3	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	337	first strand
Strand 2	C	343	344	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	366	first strand
Strand 2	C	379	380	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YVB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YVB