Analysis of interatomic Contacts of Structural Units in PDB entry:
7YVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YVC entry

There are 3 chains in PDB entry 7YVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 91GLU 577
B
 ARG 91GLU 577
C
 ARG 91GLU 577
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 7YVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 118Right-handed alpha
Helix 2
AA2
A
148 158Right-handed alpha
Helix 3
AA3
A
161 174Right-handed alpha
Helix 4
AA4
A
178 183Right-handed alpha
Helix 5
AA5
A
184 192Right-handed alpha
Helix 6
AA6
A
194 199Right-handed 310
Helix 7
AA7
A
202 206Right-handed alpha
Helix 8
AA8
A
218 220Right-handed 310
Helix 9
AA9
A
299 304Right-handed alpha
Helix 10
AB1
A
346 364Right-handed alpha
Helix 11
AB2
A
386 392Right-handed alpha
Helix 12
AB3
A
406 422Right-handed alpha
Helix 13
AB4
A
424 429Right-handed 310
Helix 14
AB5
A
451 453Right-handed 310
Helix 15
AB6
A
454 464Right-handed alpha
Helix 16
AB7
A
475 487Right-handed alpha
Helix 17
AB8
A
510 526Right-handed alpha
Helix 18
AB9
A
549 576Right-handed alpha
Helix 19
AC1
B
92 118Right-handed alpha
Helix 20
AC2
B
148 158Right-handed alpha
Helix 21
AC3
B
161 174Right-handed alpha
Helix 22
AC4
B
178 183Right-handed alpha
Helix 23
AC5
B
184 192Right-handed alpha
Helix 24
AC6
B
194 199Right-handed 310
Helix 25
AC7
B
202 206Right-handed alpha
Helix 26
AC8
B
218 220Right-handed 310
Helix 27
AC9
B
299 304Right-handed alpha
Helix 28
AD1
B
346 364Right-handed alpha
Helix 29
AD2
B
386 392Right-handed alpha
Helix 30
AD3
B
406 422Right-handed alpha
Helix 31
AD4
B
424 429Right-handed 310
Helix 32
AD5
B
451 453Right-handed 310
Helix 33
AD6
B
454 464Right-handed alpha
Helix 34
AD7
B
475 487Right-handed alpha
Helix 35
AD8
B
510 526Right-handed alpha
Helix 36
AD9
B
549 576Right-handed alpha
Helix 37
AE1
C
92 118Right-handed alpha
Helix 38
AE2
C
148 158Right-handed alpha
Helix 39
AE3
C
161 174Right-handed alpha
Helix 40
AE4
C
178 183Right-handed alpha
Helix 41
AE5
C
184 192Right-handed alpha
Helix 42
AE6
C
194 199Right-handed 310
Helix 43
AE7
C
202 206Right-handed alpha
Helix 44
AE8
C
218 220Right-handed 310
Helix 45
AE9
C
299 304Right-handed alpha
Helix 46
AF1
C
346 364Right-handed alpha
Helix 47
AF2
C
386 392Right-handed alpha
Helix 48
AF3
C
406 422Right-handed alpha
Helix 49
AF4
C
424 429Right-handed 310
Helix 50
AF5
C
451 453Right-handed 310
Helix 51
AF6
C
454 464Right-handed alpha
Helix 52
AF7
C
475 487Right-handed alpha
Helix 53
AF8
C
510 526Right-handed alpha
Helix 54
AF9
C
549 576Right-handed alpha
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There are 12 sheets in PDB entry 7YVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 129first strand
Strand 2
A
539 546anti-parallel
Strand 3
A
311 323parallel
Strand 4
A
527 534parallel
Strand 5
A
256 261anti-parallel
Strand 6
A
207 212anti-parallel
Strand 7
A
215 216anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 129first strand
Strand 2
A
539 546anti-parallel
Strand 3
A
311 323parallel
Strand 4
A
436 448anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
246 247anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 227first strand
Strand 2
A
231 236anti-parallel
Strand 3
A
138 143anti-parallel
Strand 4
A
287 292anti-parallel
Strand 5
A
305 307anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 129first strand
Strand 2
B
539 546anti-parallel
Strand 3
B
311 323parallel
Strand 4
B
527 534parallel
Strand 5
B
256 261anti-parallel
Strand 6
B
207 212anti-parallel
Strand 7
B
215 216anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 129first strand
Strand 2
B
539 546anti-parallel
Strand 3
B
311 323parallel
Strand 4
B
436 448anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
246 247anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 227first strand
Strand 2
B
231 236anti-parallel
Strand 3
B
138 143anti-parallel
Strand 4
B
287 292anti-parallel
Strand 5
B
305 307anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 129first strand
Strand 2
C
539 546anti-parallel
Strand 3
C
311 323parallel
Strand 4
C
527 534parallel
Strand 5
C
256 261anti-parallel
Strand 6
C
207 212anti-parallel
Strand 7
C
215 216anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 129first strand
Strand 2
C
539 546anti-parallel
Strand 3
C
311 323parallel
Strand 4
C
436 448anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 135first strand
Strand 2
C
246 247anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
222 227first strand
Strand 2
C
231 236anti-parallel
Strand 3
C
138 143anti-parallel
Strand 4
C
287 292anti-parallel
Strand 5
C
305 307anti-parallel
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