Analysis of interatomic Contacts of Structural Units in PDB entry:
7YVR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YVR entry

There are 8 chains in PDB entry 7YVR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 11	THR 213
A	ASN 215	ASN 352
B	ASP 10	THR 213
B	ASN 215	ASN 352
C	ASP 10	THR 213
C	ASN 215	ASN 352
D	THR 11	THR 213
D	ASN 215	LEU 311

There are 65 helices in PDB entry 7YVR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	34	Right-handed alpha
Helix 2	AA2	A	44	59	Right-handed alpha
Helix 3	AA3	A	69	82	Right-handed alpha
Helix 4	AA4	A	94	98	Right-handed 310
Helix 5	AA5	A	102	108	Right-handed alpha
Helix 6	AA6	A	124	133	Right-handed alpha
Helix 7	AA7	A	160	174	Right-handed alpha
Helix 8	AA8	A	184	193	Right-handed alpha
Helix 9	AA9	A	195	200	Right-handed alpha
Helix 10	AB1	A	227	229	Right-handed 310
Helix 11	AB2	A	230	241	Right-handed alpha
Helix 12	AB3	A	248	260	Right-handed alpha
Helix 13	AB4	A	262	284	Right-handed alpha
Helix 14	AB5	A	304	314	Right-handed alpha
Helix 15	AB6	A	337	351	Right-handed alpha
Helix 16	AB7	B	23	33	Right-handed alpha
Helix 17	AB8	B	44	58	Right-handed alpha
Helix 18	AB9	B	69	82	Right-handed alpha
Helix 19	AC1	B	94	99	Right-handed alpha
Helix 20	AC2	B	102	108	Right-handed alpha
Helix 21	AC3	B	124	133	Right-handed alpha
Helix 22	AC4	B	160	174	Right-handed alpha
Helix 23	AC5	B	184	193	Right-handed alpha
Helix 24	AC6	B	195	200	Right-handed alpha
Helix 25	AC7	B	201	204	Right-handed 310
Helix 26	AC8	B	212	216	Right-handed 310
Helix 27	AC9	B	227	229	Right-handed 310
Helix 28	AD1	B	230	241	Right-handed alpha
Helix 29	AD2	B	247	250	Right-handed 310
Helix 30	AD3	B	251	260	Right-handed alpha
Helix 31	AD4	B	262	284	Right-handed alpha
Helix 32	AD5	B	304	314	Right-handed alpha
Helix 33	AD6	B	337	352	Right-handed alpha
Helix 34	AD7	C	23	34	Right-handed alpha
Helix 35	AD8	C	44	59	Right-handed alpha
Helix 36	AD9	C	69	82	Right-handed alpha
Helix 37	AE1	C	94	99	Right-handed alpha
Helix 38	AE2	C	102	108	Right-handed alpha
Helix 39	AE3	C	124	134	Right-handed alpha
Helix 40	AE4	C	160	174	Right-handed alpha
Helix 41	AE5	C	184	193	Right-handed alpha
Helix 42	AE6	C	200	204	Right-handed 310
Helix 43	AE7	C	212	216	Right-handed 310
Helix 44	AE8	C	227	229	Right-handed 310
Helix 45	AE9	C	230	241	Right-handed alpha
Helix 46	AF1	C	248	260	Right-handed alpha
Helix 47	AF2	C	262	284	Right-handed alpha
Helix 48	AF3	C	304	314	Right-handed alpha
Helix 49	AF4	C	337	352	Right-handed alpha
Helix 50	AF5	D	23	34	Right-handed alpha
Helix 51	AF6	D	44	58	Right-handed alpha
Helix 52	AF7	D	69	82	Right-handed alpha
Helix 53	AF8	D	94	98	Right-handed 310
Helix 54	AF9	D	102	108	Right-handed alpha
Helix 55	AG1	D	124	134	Right-handed alpha
Helix 56	AG2	D	160	174	Right-handed alpha
Helix 57	AG3	D	184	193	Right-handed alpha
Helix 58	AG4	D	195	200	Right-handed alpha
Helix 59	AG5	D	212	216	Right-handed 310
Helix 60	AG6	D	227	229	Right-handed 310
Helix 61	AG7	D	230	241	Right-handed alpha
Helix 62	AG8	D	248	260	Right-handed alpha
Helix 63	AG9	D	262	284	Right-handed alpha
Helix 64	AH1	D	304	314	Right-handed alpha
Helix 65	AH2	D	337	351	Right-handed alpha

There are 9 sheets in PDB entry 7YVR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	67	first strand
Strand 2	A	221	225	anti-parallel
Strand 3	A	207	210	anti-parallel
Strand 4	A	177	182	parallel
Strand 5	A	143	150	parallel
Strand 6	A	86	91	parallel
Strand 7	A	112	116	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	290	first strand
Strand 2	A	298	302	anti-parallel
Strand 3	A	327	331	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	67	first strand
Strand 2	B	221	225	anti-parallel
Strand 3	B	207	210	anti-parallel
Strand 4	B	177	182	parallel
Strand 5	B	143	150	parallel
Strand 6	B	86	91	parallel
Strand 7	B	112	116	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	290	first strand
Strand 2	B	298	302	anti-parallel
Strand 3	B	327	331	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	67	first strand
Strand 2	C	221	225	anti-parallel
Strand 3	C	207	210	anti-parallel
Strand 4	C	177	182	parallel
Strand 5	C	143	150	parallel
Strand 6	C	86	91	parallel
Strand 7	C	112	116	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	290	first strand
Strand 2	C	298	302	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	319	320	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	67	first strand
Strand 2	D	221	225	anti-parallel
Strand 3	D	207	210	anti-parallel
Strand 4	D	177	182	parallel
Strand 5	D	143	150	parallel
Strand 6	D	86	91	parallel
Strand 7	D	112	116	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	122	123	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	290	first strand
Strand 2	D	298	302	anti-parallel
Strand 3	D	327	331	anti-parallel
Strand 4	D	319	320	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YVR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YVR