Analysis of interatomic Contacts of Structural Units in PDB entry:
7YVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YVT entry

There are 3 chains in PDB entry 7YVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ASN 284
B
 MET 1ASN 284
C
 SER 4LEU 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 7YVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 44Right-handed 310
Helix 2
AA2
A
61 67Right-handed alpha
Helix 3
AA3
A
69 77Right-handed alpha
Helix 4
AA4
A
121 129Right-handed alpha
Helix 5
AA5
A
129 138Right-handed alpha
Helix 6
AA6
A
151 164Right-handed alpha
Helix 7
AA7
A
179 182Right-handed 310
Helix 8
AA8
A
183 195Right-handed alpha
Helix 9
AA9
A
198 203Right-handed alpha
Helix 10
AB1
A
205 212Right-handed alpha
Helix 11
AB2
A
232 237Right-handed alpha
Helix 12
AB3
A
238 250Right-handed alpha
Helix 13
AB4
A
264 271Right-handed alpha
Helix 14
AB5
A
271 284Right-handed alpha
Helix 15
AB6
B
39 44Right-handed 310
Helix 16
AB7
B
61 67Right-handed alpha
Helix 17
AB8
B
69 77Right-handed alpha
Helix 18
AB9
B
121 129Right-handed alpha
Helix 19
AC1
B
129 138Right-handed alpha
Helix 20
AC2
B
151 164Right-handed alpha
Helix 21
AC3
B
179 182Right-handed 310
Helix 22
AC4
B
183 195Right-handed alpha
Helix 23
AC5
B
197 204Right-handed 310
Helix 24
AC6
B
205 212Right-handed alpha
Helix 25
AC7
B
232 237Right-handed alpha
Helix 26
AC8
B
238 250Right-handed alpha
Helix 27
AC9
B
264 284Right-handed alpha
Helix 28
AD1
C
39 44Right-handed 310
Helix 29
AD2
C
61 67Right-handed alpha
Helix 30
AD3
C
69 77Right-handed alpha
Helix 31
AD4
C
121 128Right-handed alpha
Helix 32
AD5
C
129 138Right-handed alpha
Helix 33
AD6
C
151 163Right-handed alpha
Helix 34
AD7
C
179 182Right-handed 310
Helix 35
AD8
C
183 195Right-handed alpha
Helix 36
AD9
C
197 204Right-handed 310
Helix 37
AE1
C
205 211Right-handed alpha
Helix 38
AE2
C
238 249Right-handed alpha
Helix 39
AE3
C
264 271Right-handed alpha
Helix 40
AE4
C
271 283Right-handed alpha
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There are 7 sheets in PDB entry 7YVT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 13first strand
Strand 2
A
16 24anti-parallel
Strand 3
A
31 38anti-parallel
Strand 4
A
79 83anti-parallel
Strand 5
A
47 53parallel
Strand 6
A
140 149parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
222 227parallel
Strand 3
A
253 258parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 13first strand
Strand 2
B
16 24anti-parallel
Strand 3
B
31 38anti-parallel
Strand 4
B
79 83anti-parallel
Strand 5
B
47 53parallel
Strand 6
B
140 149parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 174first strand
Strand 2
B
222 227parallel
Strand 3
B
253 258parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 13first strand
Strand 2
C
16 24anti-parallel
Strand 3
C
31 38anti-parallel
Strand 4
C
80 82anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 53first strand
Strand 2
C
140 149parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 174first strand
Strand 2
C
222 227parallel
Strand 3
C
253 258parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il