Analysis of interatomic Contacts of Structural Units in PDB entry:
7YVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YVV entry

There is 1 chain in PDB entry 7YVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7ASP 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 7YVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 32Right-handed alpha
Helix 2
AA2
A
74 84Right-handed alpha
Helix 3
AA3
A
96 107Right-handed alpha
Helix 4
AA4
A
171 182Right-handed alpha
Helix 5
AA5
A
226 236Right-handed alpha
Helix 6
AA6
A
249 260Right-handed alpha
Helix 7
AA7
A
268 274Right-handed alpha
Helix 8
AA8
A
285 293Right-handed alpha
Helix 9
AA9
A
332 347Right-handed alpha
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There are 2 sheets in PDB entry 7YVV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
52 59anti-parallel
Strand 3
A
62 69anti-parallel
Strand 4
A
13 20parallel
Strand 5
A
86 93anti-parallel
Strand 6
A
133 138parallel
Strand 7
A
122 127anti-parallel
Strand 8
A
111 117anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 195first strand
Strand 2
A
198 206anti-parallel
Strand 3
A
213 219anti-parallel
Strand 4
A
157 166parallel
Strand 5
A
239 247anti-parallel
Strand 6
A
319 325parallel
Strand 7
A
303 309anti-parallel
Strand 8
A
295 298anti-parallel
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