Analysis of interatomic Contacts of Structural Units in PDB entry:
7YVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YVY entry

There are 3 chains in PDB entry 7YVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 388
B
 MET 1VAL 388
C
 ARG 2ARG 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 7YVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 37Right-handed alpha
Helix 2
AA2
A
56 59Right-handed 310
Helix 3
AA3
A
60 69Right-handed alpha
Helix 4
AA4
A
81 83Right-handed 310
Helix 5
AA5
A
84 100Right-handed alpha
Helix 6
AA6
A
138 157Right-handed alpha
Helix 7
AA7
A
159 176Right-handed alpha
Helix 8
AA8
A
187 193Right-handed alpha
Helix 9
AA9
A
202 206Right-handed 310
Helix 10
AB1
A
220 227Right-handed alpha
Helix 11
AB2
A
258 273Right-handed alpha
Helix 12
AB3
A
275 279Right-handed 310
Helix 13
AB4
A
288 299Right-handed alpha
Helix 14
AB5
A
306 313Right-handed alpha
Helix 15
AB6
A
328 333Right-handed alpha
Helix 16
AB7
A
339 353Right-handed alpha
Helix 17
AB8
B
21 37Right-handed alpha
Helix 18
AB9
B
60 69Right-handed alpha
Helix 19
AC1
B
81 83Right-handed 310
Helix 20
AC2
B
84 100Right-handed alpha
Helix 21
AC3
B
137 157Right-handed alpha
Helix 22
AC4
B
159 176Right-handed alpha
Helix 23
AC5
B
187 193Right-handed alpha
Helix 24
AC6
B
204 206Right-handed 310
Helix 25
AC7
B
220 228Right-handed alpha
Helix 26
AC8
B
230 233Right-handed 310
Helix 27
AC9
B
248 252Right-handed 310
Helix 28
AD1
B
258 273Right-handed alpha
Helix 29
AD2
B
275 279Right-handed 310
Helix 30
AD3
B
288 300Right-handed alpha
Helix 31
AD4
B
306 313Right-handed alpha
Helix 32
AD5
B
328 334Right-handed alpha
Helix 33
AD6
B
339 353Right-handed alpha
Helix 34
AD7
C
21 38Right-handed alpha
Helix 35
AD8
C
60 69Right-handed alpha
Helix 36
AD9
C
81 83Right-handed 310
Helix 37
AE1
C
84 100Right-handed alpha
Helix 38
AE2
C
139 157Right-handed alpha
Helix 39
AE3
C
159 176Right-handed alpha
Helix 40
AE4
C
187 193Right-handed alpha
Helix 41
AE5
C
202 206Right-handed 310
Helix 42
AE6
C
220 228Right-handed alpha
Helix 43
AE7
C
230 234Right-handed 310
Helix 44
AE8
C
248 252Right-handed 310
Helix 45
AE9
C
258 273Right-handed alpha
Helix 46
AF1
C
275 279Right-handed 310
Helix 47
AF2
C
288 299Right-handed alpha
Helix 48
AF3
C
308 313Right-handed alpha
Helix 49
AF4
C
328 333Right-handed alpha
Helix 50
AF5
C
336 338Right-handed 310
Helix 51
AF6
C
339 354Right-handed alpha
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There are 4 sheets in PDB entry 7YVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
44 48parallel
Strand 3
A
104 111parallel
Strand 4
A
212 219anti-parallel
Strand 5
A
5 11anti-parallel
Strand 6
A
235 244anti-parallel
Strand 7
A
379 387anti-parallel
Strand 8
A
367 374anti-parallel
Strand 9
A
281 283parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 79first strand
Strand 2
B
44 48parallel
Strand 3
B
105 111parallel
Strand 4
B
212 219anti-parallel
Strand 5
B
4 11anti-parallel
Strand 6
B
235 244anti-parallel
Strand 7
B
379 387anti-parallel
Strand 8
B
367 374anti-parallel
Strand 9
B
281 283parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 198first strand
Strand 2
B
201 202anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 79first strand
Strand 2
C
44 48parallel
Strand 3
C
104 111parallel
Strand 4
C
212 219anti-parallel
Strand 5
C
5 11anti-parallel
Strand 6
C
235 244anti-parallel
Strand 7
C
379 386anti-parallel
Strand 8
C
367 374anti-parallel
Strand 9
C
281 283parallel
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