Analysis of interatomic Contacts of Structural Units in PDB entry:
7YW5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YW5 entry

There are 2 chains in PDB entry 7YW5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 176ASN 349
B
 PRO 176PRO 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7YW5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
226 231Right-handed alpha
Helix 2
AA2
A
233 238Right-handed alpha
Helix 3
AA3
A
243 255Right-handed alpha
Helix 4
AA4
A
264 272Right-handed alpha
Helix 5
AA5
A
302 310Right-handed alpha
Helix 6
AA6
A
323 337Right-handed alpha
Helix 7
AA7
A
338 349Right-handed alpha
Helix 8
AA8
B
191 194Right-handed 310
Helix 9
AA9
B
233 238Right-handed alpha
Helix 10
AB1
B
243 255Right-handed alpha
Helix 11
AB2
B
264 272Right-handed alpha
Helix 12
AB3
B
276 278Right-handed 310
Helix 13
AB4
B
302 312Right-handed alpha
Helix 14
AB5
B
323 338Right-handed alpha
Helix 15
AB6
B
339 346Right-handed alpha
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There are 4 sheets in PDB entry 7YW5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
179 189anti-parallel
Strand 3
A
195 204anti-parallel
Strand 4
A
210 217anti-parallel
Strand 5
A
241 242parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
179 189anti-parallel
Strand 3
A
258 261parallel
Strand 4
A
280 282parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 224first strand
Strand 2
B
179 189anti-parallel
Strand 3
B
195 204anti-parallel
Strand 4
B
210 217anti-parallel
Strand 5
B
241 242parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 224first strand
Strand 2
B
179 189anti-parallel
Strand 3
B
258 261parallel
Strand 4
B
280 282parallel
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