Analysis of interatomic Contacts of Structural Units in PDB entry:
7YW7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YW7 entry

There are 4 chains in PDB entry 7YW7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1	SER 397
B	ILE 1	SER 397
C	ILE 1	SER 397
D	ILE 1	SER 397

There are 31 helices in PDB entry 7YW7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	6	Right-handed 310
Helix 2	AA2	A	82	86	Right-handed 310
Helix 3	AA3	A	131	133	Right-handed 310
Helix 4	AA4	A	191	193	Right-handed 310
Helix 5	AA5	A	209	214	Right-handed alpha
Helix 6	AA6	A	232	235	Right-handed 310
Helix 7	AA7	A	255	263	Right-handed alpha
Helix 8	AA8	A	385	389	Right-handed 310
Helix 9	AA9	B	82	86	Right-handed 310
Helix 10	AB1	B	100	104	Right-handed 310
Helix 11	AB2	B	131	133	Right-handed 310
Helix 12	AB3	B	175	177	Right-handed 310
Helix 13	AB4	B	209	214	Right-handed alpha
Helix 14	AB5	B	232	235	Right-handed 310
Helix 15	AB6	B	255	263	Right-handed alpha
Helix 16	AB7	B	385	389	Right-handed 310
Helix 17	AB8	C	82	86	Right-handed 310
Helix 18	AB9	C	131	133	Right-handed 310
Helix 19	AC1	C	150	157	Right-handed alpha
Helix 20	AC2	C	191	193	Right-handed 310
Helix 21	AC3	C	209	214	Right-handed alpha
Helix 22	AC4	C	232	235	Right-handed 310
Helix 23	AC5	C	255	263	Right-handed alpha
Helix 24	AC6	C	385	389	Right-handed 310
Helix 25	AC7	D	1	6	Right-handed 310
Helix 26	AC8	D	82	86	Right-handed 310
Helix 27	AC9	D	131	133	Right-handed 310
Helix 28	AD1	D	175	177	Right-handed 310
Helix 29	AD2	D	209	214	Right-handed alpha
Helix 30	AD3	D	232	235	Right-handed 310
Helix 31	AD4	D	255	263	Right-handed alpha

There are 30 sheets in PDB entry 7YW7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	275	278	anti-parallel
Strand 5	A	267	272	anti-parallel
Strand 6	A	204	208	anti-parallel
Strand 7	A	195	199	anti-parallel
Strand 8	A	110	128	anti-parallel
Strand 9	A	135	143	first strand
Strand 10	A	158	163	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	98	first strand
Strand 2	A	110	128	anti-parallel
Strand 3	A	195	199	anti-parallel
Strand 4	A	204	208	anti-parallel
Strand 5	A	267	272	anti-parallel
Strand 6	A	275	278	anti-parallel
Strand 7	A	41	50	anti-parallel
Strand 8	A	55	72	first strand
Strand 9	A	219	220	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	282	288	anti-parallel
Strand 3	A	179	186	anti-parallel
Strand 4	A	169	173	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	249	251	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	308	first strand
Strand 2	A	320	326	anti-parallel
Strand 3	A	313	314	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	308	first strand
Strand 2	A	320	326	anti-parallel
Strand 3	A	366	372	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	358	359	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	337	340	anti-parallel
Strand 3	A	379	383	anti-parallel
Strand 4	A	390	394	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	30	34	parallel
Strand 3	B	41	51	anti-parallel
Strand 4	B	275	278	anti-parallel
Strand 5	B	267	271	anti-parallel
Strand 6	B	204	208	anti-parallel
Strand 7	B	195	199	anti-parallel
Strand 8	B	110	129	anti-parallel
Strand 9	B	135	143	first strand
Strand 10	B	158	163	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	98	first strand
Strand 2	B	110	129	anti-parallel
Strand 3	B	195	199	anti-parallel
Strand 4	B	204	208	anti-parallel
Strand 5	B	267	271	anti-parallel
Strand 6	B	275	278	anti-parallel
Strand 7	B	41	51	anti-parallel
Strand 8	B	54	73	first strand
Strand 9	B	219	220	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	26	first strand
Strand 2	B	282	288	anti-parallel
Strand 3	B	179	184	anti-parallel
Strand 4	B	169	173	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	239	first strand
Strand 2	B	249	251	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	301	first strand
Strand 2	B	333	334	parallel
Strand 3	B	358	359	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	314	first strand
Strand 2	B	320	324	anti-parallel
Strand 3	B	368	373	anti-parallel
Strand 4	B	351	352	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	340	first strand
Strand 2	B	379	383	anti-parallel
Strand 3	B	390	394	anti-parallel

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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	34	parallel
Strand 3	C	41	50	anti-parallel
Strand 4	C	275	278	anti-parallel
Strand 5	C	267	272	anti-parallel
Strand 6	C	203	208	anti-parallel
Strand 7	C	195	200	anti-parallel
Strand 8	C	110	128	anti-parallel
Strand 9	C	135	143	first strand
Strand 10	C	158	163	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	98	first strand
Strand 2	C	110	128	anti-parallel
Strand 3	C	195	200	anti-parallel
Strand 4	C	203	208	anti-parallel
Strand 5	C	267	272	anti-parallel
Strand 6	C	275	278	anti-parallel
Strand 7	C	41	50	anti-parallel
Strand 8	C	55	73	first strand
Strand 9	C	219	221	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	25	first strand
Strand 2	C	283	288	anti-parallel
Strand 3	C	178	186	anti-parallel
Strand 4	C	169	174	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	239	first strand
Strand 2	C	249	251	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	301	first strand
Strand 2	C	333	334	parallel
Strand 3	C	358	359	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	308	first strand
Strand 2	C	320	327	anti-parallel
Strand 3	C	313	314	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	308	first strand
Strand 2	C	320	327	anti-parallel
Strand 3	C	367	373	anti-parallel
Strand 4	C	351	352	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	349	first strand
Strand 2	C	337	340	anti-parallel
Strand 3	C	378	383	anti-parallel
Strand 4	C	390	395	anti-parallel

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There are 10 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	30	34	parallel
Strand 3	D	41	50	anti-parallel
Strand 4	D	275	278	anti-parallel
Strand 5	D	267	272	anti-parallel
Strand 6	D	204	208	anti-parallel
Strand 7	D	195	199	anti-parallel
Strand 8	D	110	129	anti-parallel
Strand 9	D	135	143	first strand
Strand 10	D	158	163	anti-parallel

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There are 9 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	98	first strand
Strand 2	D	110	129	anti-parallel
Strand 3	D	195	199	anti-parallel
Strand 4	D	204	208	anti-parallel
Strand 5	D	267	272	anti-parallel
Strand 6	D	275	278	anti-parallel
Strand 7	D	41	50	anti-parallel
Strand 8	D	54	73	first strand
Strand 9	D	219	221	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	26	first strand
Strand 2	D	282	288	anti-parallel
Strand 3	D	178	184	anti-parallel
Strand 4	D	169	174	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	240	first strand
Strand 2	D	248	251	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	314	first strand
Strand 2	D	320	326	anti-parallel
Strand 3	D	366	373	anti-parallel
Strand 4	D	351	352	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	334	first strand
Strand 2	D	358	359	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	340	first strand
Strand 2	D	379	383	anti-parallel
Strand 3	D	390	394	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YW7

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YW7