Analysis of interatomic Contacts of Structural Units in PDB entry:
7YWE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YWE entry

There are 3 chains in PDB entry 7YWE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 19LEU 156
B
 SER 5LEU 156
C
 LEU 15LEU 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 7YWE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
122 125Right-handed 310
Helix 2
AA2
B
122 125Right-handed 310
Helix 3
AA3
C
122 125Right-handed 310
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There are 4 sheets in PDB entry 7YWE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
54 62anti-parallel
Strand 3
A
71 81anti-parallel
Strand 4
A
85 93anti-parallel
Strand 5
A
102 108anti-parallel
Strand 6
A
114 121anti-parallel
Strand 7
A
128 138anti-parallel
Strand 8
A
143 152anti-parallel
Strand 9
A
26 30anti-parallel
Strand 10
A
54 62anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 14first strand
Strand 2
C
16 30anti-parallel
Strand 3
C
54 62anti-parallel
Strand 4
C
39 43anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 14first strand
Strand 2
C
16 30anti-parallel
Strand 3
C
143 154anti-parallel
Strand 4
C
128 138anti-parallel
Strand 5
C
114 121anti-parallel
Strand 6
C
102 108anti-parallel
Strand 7
C
85 93anti-parallel
Strand 8
C
71 81anti-parallel
Strand 9
C
54 62anti-parallel
Strand 10
C
39 43anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
54 62anti-parallel
Strand 3
B
71 81anti-parallel
Strand 4
B
85 93anti-parallel
Strand 5
B
102 108anti-parallel
Strand 6
B
113 121anti-parallel
Strand 7
B
128 138anti-parallel
Strand 8
B
143 153anti-parallel
Strand 9
B
19 30anti-parallel
Strand 10
B
54 62anti-parallel
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