Analysis of interatomic Contacts of Structural Units in PDB entry:
7YWW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YWW entry

There are 2 chains in PDB entry 7YWW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 160ILE 306
B
 MET 157ILE 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 7YWW. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
157 161Right-handed 310
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There are 6 sheets in PDB entry 7YWW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 170first strand
Strand 2
A
296 304anti-parallel
Strand 3
A
284 292anti-parallel
Strand 4
A
176 178anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 219first strand
Strand 2
A
198 207anti-parallel
Strand 3
A
184 194anti-parallel
Strand 4
A
224 229anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 268first strand
Strand 2
A
249 259anti-parallel
Strand 3
A
236 246anti-parallel
Strand 4
A
273 278anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 170first strand
Strand 2
B
296 304anti-parallel
Strand 3
B
284 292anti-parallel
Strand 4
B
176 178anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 219first strand
Strand 2
B
198 207anti-parallel
Strand 3
B
184 194anti-parallel
Strand 4
B
224 229anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 268first strand
Strand 2
B
249 259anti-parallel
Strand 3
B
236 246anti-parallel
Strand 4
B
273 278anti-parallel
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