Analysis of interatomic Contacts of Structural Units in PDB entry:
7YXH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YXH entry

There are 2 chains in PDB entry 7YXH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 312
B
 MET 1SER 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7YXH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 18Right-handed alpha
Helix 2
AA2
A
32 40Right-handed alpha
Helix 3
AA3
A
55 61Right-handed alpha
Helix 4
AA4
A
62 70Right-handed alpha
Helix 5
AA5
A
107 115Right-handed alpha
Helix 6
AA6
A
129 135Right-handed alpha
Helix 7
AA7
A
136 142Right-handed 310
Helix 8
AA8
A
143 146Right-handed 310
Helix 9
AA9
A
147 155Right-handed alpha
Helix 10
AB1
A
196 203Right-handed 310
Helix 11
AB2
A
251 257Right-handed 310
Helix 12
AB3
A
298 311Right-handed alpha
Helix 13
AB4
B
2 19Right-handed alpha
Helix 14
AB5
B
32 40Right-handed alpha
Helix 15
AB6
B
55 61Right-handed alpha
Helix 16
AB7
B
62 71Right-handed alpha
Helix 17
AB8
B
107 115Right-handed alpha
Helix 18
AB9
B
143 146Right-handed 310
Helix 19
AC1
B
147 155Right-handed alpha
Helix 20
AC2
B
196 203Right-handed 310
Helix 21
AC3
B
251 257Right-handed 310
Helix 22
AC4
B
298 311Right-handed alpha
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There are 8 sheets in PDB entry 7YXH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
47 49parallel
Strand 3
A
269 272anti-parallel
Strand 4
A
179 187anti-parallel
Strand 5
A
286 294anti-parallel
Strand 6
A
160 166anti-parallel
Strand 7
A
121 124anti-parallel
Strand 8
A
74 80anti-parallel
Strand 9
A
101 106anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
94 99anti-parallel
Strand 3
A
205 215parallel
Strand 4
A
221 225anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
94 99anti-parallel
Strand 3
A
205 215parallel
Strand 4
A
235 239anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
277 282anti-parallel
Strand 3
A
189 195anti-parallel
Strand 4
A
260 265anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 27first strand
Strand 2
B
47 49parallel
Strand 3
B
269 272anti-parallel
Strand 4
B
179 187anti-parallel
Strand 5
B
286 294anti-parallel
Strand 6
B
160 166anti-parallel
Strand 7
B
121 126anti-parallel
Strand 8
B
74 80anti-parallel
Strand 9
B
101 106anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
94 99anti-parallel
Strand 3
B
205 215parallel
Strand 4
B
221 225anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
94 99anti-parallel
Strand 3
B
205 215parallel
Strand 4
B
235 239anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 175first strand
Strand 2
B
277 282anti-parallel
Strand 3
B
189 195anti-parallel
Strand 4
B
260 265anti-parallel
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