Analysis of interatomic Contacts of Structural Units in PDB entry:
7YYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YYE entry

There are 4 chains in PDB entry 7YYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 364ASN 557
B
 LYS 372LYS 558
C
 SER 364GLN 559
D
 HIS 365LYS 558
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7YYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
365 375Right-handed alpha
Helix 2
AA2
A
398 409Right-handed alpha
Helix 3
AA3
A
414 428Right-handed alpha
Helix 4
AA4
A
487 489Right-handed 310
Helix 5
AA5
A
501 505Right-handed 310
Helix 6
AA6
A
512 526Right-handed alpha
Helix 7
AA7
A
531 534Right-handed 310
Helix 8
AA8
A
535 556Right-handed alpha
Helix 9
AA9
B
398 409Right-handed alpha
Helix 10
AB1
B
414 428Right-handed alpha
Helix 11
AB2
B
487 489Right-handed 310
Helix 12
AB3
B
501 505Right-handed 310
Helix 13
AB4
B
512 526Right-handed alpha
Helix 14
AB5
B
531 534Right-handed 310
Helix 15
AB6
B
535 556Right-handed alpha
Helix 16
AB7
C
365 375Right-handed alpha
Helix 17
AB8
C
398 409Right-handed alpha
Helix 18
AB9
C
414 428Right-handed alpha
Helix 19
AC1
C
487 489Right-handed 310
Helix 20
AC2
C
501 505Right-handed 310
Helix 21
AC3
C
512 526Right-handed alpha
Helix 22
AC4
C
531 534Right-handed 310
Helix 23
AC5
C
535 557Right-handed alpha
Helix 24
AC6
D
366 375Right-handed alpha
Helix 25
AC7
D
398 409Right-handed alpha
Helix 26
AC8
D
414 428Right-handed alpha
Helix 27
AC9
D
487 489Right-handed 310
Helix 28
AD1
D
501 505Right-handed 310
Helix 29
AD2
D
512 526Right-handed alpha
Helix 30
AD3
D
531 534Right-handed 310
Helix 31
AD4
D
535 556Right-handed alpha
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There are 4 sheets in PDB entry 7YYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
474 485anti-parallel
Strand 3
A
445 452anti-parallel
Strand 4
A
434 440anti-parallel
Strand 5
A
390 396parallel
Strand 6
A
510 511anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
410 411first strand
Strand 2
B
474 485anti-parallel
Strand 3
B
445 452anti-parallel
Strand 4
B
434 440anti-parallel
Strand 5
B
390 396parallel
Strand 6
B
510 511anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
410 411first strand
Strand 2
C
474 485anti-parallel
Strand 3
C
445 452anti-parallel
Strand 4
C
434 440anti-parallel
Strand 5
C
390 396parallel
Strand 6
C
510 511anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
410 411first strand
Strand 2
D
474 485anti-parallel
Strand 3
D
445 452anti-parallel
Strand 4
D
434 440anti-parallel
Strand 5
D
390 396parallel
Strand 6
D
510 511anti-parallel
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