Analysis of interatomic Contacts of Structural Units in PDB entry:
7YYH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YYH entry

There are 23 chains in PDB entry 7YYH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 41	LEU 139
B	ASP 24	GLY 101
C	ALA 14	ILE 111
D	ARG 33	SER 124
E	GLY 46	LEU 139
F	LEU 22	GLY 101
G	LYS 15	PRO 117
H	ASP 40	MET 246
I	GLU 63	PRO 745
J	T 20	A 172
K	ASN 19	GLN 269
L	PRO 26	GLU 344
M	SER 2	GLU 173
N	ASP 2	ASP 338
O	GLY 16	ARG 289
P	SER 53	CYS 283
Q	GLN 74	ASP 266
R	ASP 84	ASN 177
U	LYS 249	LYS 413
h	ARG 33	SER 124
k	SER 515	SER 535
l	ARG 256	SER 535
i	A 73	A 224

There are141 helices in PDB entry 7YYH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	55	Right-handed alpha
Helix 2	AA2	A	63	79	Right-handed alpha
Helix 3	AA3	A	87	116	Right-handed alpha
Helix 4	AA4	A	122	138	Right-handed alpha
Helix 5	AA5	B	30	41	Right-handed alpha
Helix 6	AA6	B	49	76	Right-handed alpha
Helix 7	AA7	B	82	93	Right-handed alpha
Helix 8	AA8	C	16	22	Right-handed alpha
Helix 9	AA9	C	26	37	Right-handed alpha
Helix 10	AB1	C	45	73	Right-handed alpha
Helix 11	AB2	C	79	90	Right-handed alpha
Helix 12	AB3	C	90	97	Right-handed alpha
Helix 13	AB4	D	37	49	Right-handed alpha
Helix 14	AB5	D	55	84	Right-handed alpha
Helix 15	AB6	D	90	102	Right-handed alpha
Helix 16	AB7	D	103	123	Right-handed alpha
Helix 17	AB8	E	47	55	Right-handed alpha
Helix 18	AB9	E	63	78	Right-handed alpha
Helix 19	AC1	E	87	116	Right-handed alpha
Helix 20	AC2	E	122	134	Right-handed alpha
Helix 21	AC3	F	30	42	Right-handed alpha
Helix 22	AC4	F	49	76	Right-handed alpha
Helix 23	AC5	F	82	94	Right-handed alpha
Helix 24	AC6	G	16	22	Right-handed alpha
Helix 25	AC7	G	26	37	Right-handed alpha
Helix 26	AC8	G	45	72	Right-handed alpha
Helix 27	AC9	G	79	89	Right-handed alpha
Helix 28	AD1	G	90	97	Right-handed alpha
Helix 29	AD2	H	41	64	Right-handed alpha
Helix 30	AD3	H	79	115	Right-handed alpha
Helix 31	AD4	H	125	183	Right-handed alpha
Helix 32	AD5	H	201	224	Right-handed alpha
Helix 33	AD6	H	230	238	Right-handed alpha
Helix 34	AD7	I	64	75	Right-handed alpha
Helix 35	AD8	I	83	102	Right-handed alpha
Helix 36	AD9	I	105	117	Right-handed alpha
Helix 37	AE1	I	122	132	Right-handed alpha
Helix 38	AE2	I	140	154	Right-handed alpha
Helix 39	AE3	I	157	171	Right-handed alpha
Helix 40	AE4	I	172	175	Right-handed 310
Helix 41	AE5	I	178	183	Right-handed alpha
Helix 42	AE6	I	184	190	Right-handed alpha
Helix 43	AE7	I	191	193	Right-handed 310
Helix 44	AE8	I	197	209	Right-handed alpha
Helix 45	AE9	I	210	214	Right-handed 310
Helix 46	AF1	I	215	230	Right-handed alpha
Helix 47	AF2	I	232	246	Right-handed alpha
Helix 48	AF3	I	246	252	Right-handed alpha
Helix 49	AF4	I	271	281	Right-handed alpha
Helix 50	AF5	I	346	354	Right-handed alpha
Helix 51	AF6	I	364	369	Right-handed alpha
Helix 52	AF7	I	369	380	Right-handed alpha
Helix 53	AF8	I	381	404	Right-handed alpha
Helix 54	AF9	I	412	427	Right-handed alpha
Helix 55	AG1	I	433	443	Right-handed alpha
Helix 56	AG2	I	451	459	Right-handed alpha
Helix 57	AG3	I	469	474	Right-handed alpha
Helix 58	AG4	I	474	483	Right-handed alpha
Helix 59	AG5	I	486	509	Right-handed alpha
Helix 60	AG6	I	530	551	Right-handed alpha
Helix 61	AG7	I	554	569	Right-handed alpha
Helix 62	AG8	I	570	576	Right-handed alpha
Helix 63	AG9	I	584	593	Right-handed alpha
Helix 64	AH1	I	596	617	Right-handed alpha
Helix 65	AH2	I	635	651	Right-handed alpha
Helix 66	AH3	I	685	687	Right-handed 310
Helix 67	AH4	I	688	698	Right-handed alpha
Helix 68	AH5	I	719	726	Right-handed alpha
Helix 69	AH6	I	728	738	Right-handed alpha
Helix 70	AH7	K	20	43	Right-handed alpha
Helix 71	AH8	K	54	77	Right-handed alpha
Helix 72	AH9	K	85	150	Right-handed alpha
Helix 73	AI1	K	166	188	Right-handed alpha
Helix 74	AI2	K	211	226	Right-handed alpha
Helix 75	AI3	K	239	249	Right-handed alpha
Helix 76	AI4	L	27	38	Right-handed alpha
Helix 77	AI5	L	60	68	Right-handed alpha
Helix 78	AI6	L	87	103	Right-handed alpha
Helix 79	AI7	L	168	173	Right-handed alpha
Helix 80	AI8	L	189	205	Right-handed alpha
Helix 81	AI9	L	214	228	Right-handed alpha
Helix 82	AJ1	L	257	268	Right-handed alpha
Helix 83	AJ2	L	276	296	Right-handed alpha
Helix 84	AJ3	L	298	302	Right-handed 310
Helix 85	AJ4	L	324	326	Right-handed 310
Helix 86	AJ5	L	327	344	Right-handed alpha
Helix 87	AJ6	M	24	36	Right-handed alpha
Helix 88	AJ7	M	74	85	Right-handed alpha
Helix 89	AJ8	M	86	88	Right-handed 310
Helix 90	AJ9	M	89	94	Right-handed 310
Helix 91	AK1	M	113	125	Right-handed alpha
Helix 92	AK2	M	135	154	Right-handed alpha
Helix 93	AK3	M	161	170	Right-handed alpha
Helix 94	AK4	N	3	16	Right-handed alpha
Helix 95	AK5	N	17	19	Right-handed 310
Helix 96	AK6	N	20	29	Right-handed alpha
Helix 97	AK7	N	32	38	Right-handed alpha
Helix 98	AK8	N	44	59	Right-handed alpha
Helix 99	AK9	N	62	78	Right-handed alpha
Helix 100	AL1	N	100	116	Right-handed alpha
Helix 101	AL2	N	171	183	Right-handed alpha
Helix 102	AL3	N	197	206	Right-handed alpha
Helix 103	AL4	N	241	257	Right-handed alpha
Helix 104	AL5	N	304	313	Right-handed alpha
Helix 105	AL6	N	320	325	Right-handed alpha
Helix 106	AL7	O	17	27	Right-handed alpha
Helix 107	AL8	O	90	111	Right-handed alpha
Helix 108	AL9	O	161	169	Right-handed alpha
Helix 109	AM1	O	172	200	Right-handed alpha
Helix 110	AM2	O	201	204	Right-handed 310
Helix 111	AM3	O	261	278	Right-handed alpha
Helix 112	AM4	O	279	289	Right-handed alpha
Helix 113	AM5	P	54	75	Right-handed alpha
Helix 114	AM6	P	147	161	Right-handed alpha
Helix 115	AM7	P	163	191	Right-handed alpha
Helix 116	AM8	P	243	250	Right-handed alpha
Helix 117	AM9	P	254	256	Right-handed 310
Helix 118	AN1	P	257	270	Right-handed alpha
Helix 119	AN2	P	271	282	Right-handed alpha
Helix 120	AN3	Q	77	98	Right-handed alpha
Helix 121	AN4	Q	102	124	Right-handed alpha
Helix 122	AN5	Q	136	198	Right-handed alpha
Helix 123	AN6	Q	223	229	Right-handed alpha
Helix 124	AN7	Q	230	232	Right-handed 310
Helix 125	AN8	Q	234	247	Right-handed alpha
Helix 126	AN9	Q	248	264	Right-handed alpha
Helix 127	AO1	R	85	105	Right-handed alpha
Helix 128	AO2	R	108	114	Right-handed alpha
Helix 129	AO3	R	116	124	Right-handed alpha
Helix 130	AO4	R	131	150	Right-handed alpha
Helix 131	AO5	R	168	177	Right-handed alpha
Helix 132	AO6	U	250	269	Right-handed alpha
Helix 133	AO7	U	271	375	Right-handed alpha
Helix 134	AO8	U	383	385	Right-handed 310
Helix 135	AO9	U	386	395	Right-handed alpha
Helix 136	AP1	U	398	412	Right-handed alpha
Helix 137	AP2	h	37	49	Right-handed alpha
Helix 138	AP3	h	55	84	Right-handed alpha
Helix 139	AP4	h	90	102	Right-handed alpha
Helix 140	AP5	h	103	123	Right-handed alpha
Helix 141	AP6	l	261	273	Right-handed alpha

There are 22 sheets in PDB entry 7YYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	G	100	101	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	53	54	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	101	first strand
Strand 2	F	96	97	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	86	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	121	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	h	88	89	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	h	53	54	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	232	233	first strand
Strand 2	K	261	264	anti-parallel
Strand 3	K	252	254	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	47	48	first strand
Strand 2	L	274	275	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	124	first strand
Strand 2	L	136	143	anti-parallel
Strand 3	L	156	163	anti-parallel
Strand 4	L	183	187	anti-parallel
Strand 5	L	71	77	anti-parallel
Strand 6	L	208	210	anti-parallel

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There are 14 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	124	first strand
Strand 2	L	136	143	anti-parallel
Strand 3	L	156	163	anti-parallel
Strand 4	L	183	187	anti-parallel
Strand 5	L	71	77	anti-parallel
Strand 6	L	319	322	anti-parallel
Strand 7	L	312	315	anti-parallel
Strand 8	L	303	308	anti-parallel
Strand 9	L	237	242	anti-parallel
Strand 10	L	251	256	anti-parallel
Strand 11	N	291	298	anti-parallel
Strand 12	N	266	273	anti-parallel
Strand 13	N	333	337	parallel
Strand 14	l	304	305	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	80	81	first strand
Strand 2	L	178	179	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	128	131	first strand
Strand 2	M	97	102	parallel
Strand 3	M	66	71	parallel
Strand 4	M	15	21	parallel
Strand 5	M	43	49	parallel
Strand 6	N	237	239	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	120	124	first strand
Strand 2	N	130	136	anti-parallel
Strand 3	N	149	155	anti-parallel
Strand 4	N	160	164	anti-parallel
Strand 5	N	83	89	anti-parallel
Strand 6	N	187	195	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	113	114	first strand
Strand 2	O	124	130	anti-parallel
Strand 3	O	133	140	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	210	211	first strand
Strand 2	O	217	224	anti-parallel
Strand 3	O	231	238	anti-parallel
Strand 4	O	249	253	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	76	78	first strand
Strand 2	P	100	111	anti-parallel
Strand 3	P	82	88	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	76	78	first strand
Strand 2	P	100	111	anti-parallel
Strand 3	P	114	125	anti-parallel
Strand 4	P	132	141	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	195	196	first strand
Strand 2	P	205	209	anti-parallel
Strand 3	P	217	226	anti-parallel
Strand 4	P	232	241	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	516	517	first strand
Strand 2	l	523	524	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YYH

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YYH