Analysis of interatomic Contacts of Structural Units in PDB entry:
7YYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YYJ entry

There are 2 chains in PDB entry 7YYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 363LYS 558
B
 SER 364LYS 558
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7YYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
365 375Right-handed alpha
Helix 2
AA2
A
398 409Right-handed alpha
Helix 3
AA3
A
414 429Right-handed alpha
Helix 4
AA4
A
487 489Right-handed 310
Helix 5
AA5
A
494 498Right-handed 310
Helix 6
AA6
A
501 505Right-handed 310
Helix 7
AA7
A
512 526Right-handed alpha
Helix 8
AA8
A
531 534Right-handed 310
Helix 9
AA9
A
535 557Right-handed alpha
Helix 10
AB1
B
365 375Right-handed alpha
Helix 11
AB2
B
398 409Right-handed alpha
Helix 12
AB3
B
414 427Right-handed alpha
Helix 13
AB4
B
487 489Right-handed 310
Helix 14
AB5
B
494 498Right-handed 310
Helix 15
AB6
B
501 505Right-handed 310
Helix 16
AB7
B
512 526Right-handed alpha
Helix 17
AB8
B
531 534Right-handed 310
Helix 18
AB9
B
535 557Right-handed alpha
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There are 2 sheets in PDB entry 7YYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 411first strand
Strand 2
A
474 485anti-parallel
Strand 3
A
445 452anti-parallel
Strand 4
A
434 440anti-parallel
Strand 5
A
390 396parallel
Strand 6
A
510 511anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
410 411first strand
Strand 2
B
474 485anti-parallel
Strand 3
B
445 452anti-parallel
Strand 4
B
434 440anti-parallel
Strand 5
B
390 396parallel
Strand 6
B
510 511anti-parallel
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