Analysis of interatomic Contacts of Structural Units in PDB entry:
7YYL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YYL entry

There are 8 chains in PDB entry 7YYL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	LYS 421
D	ASP 2	LYS 421
E	MET 1	THR 243
F	ALA 3	THR 243
A	MET 1	LYS 421
B	ASN 3	LYS 421
G	MET 1	THR 243
H	ALA 3	THR 243

There are118 helices in PDB entry 7YYL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	2	10	Right-handed alpha
Helix 2	AA2	C	13	22	Right-handed alpha
Helix 3	AA3	C	23	32	Right-handed alpha
Helix 4	AA4	C	39	41	Right-handed 310
Helix 5	AA5	C	42	50	Right-handed alpha
Helix 6	AA6	C	54	65	Right-handed alpha
Helix 7	AA7	C	79	85	Right-handed alpha
Helix 8	AA8	C	100	105	Right-handed alpha
Helix 9	AA9	C	113	125	Right-handed alpha
Helix 10	AB1	C	128	134	Right-handed alpha
Helix 11	AB2	C	143	154	Right-handed alpha
Helix 12	AB3	C	169	192	Right-handed alpha
Helix 13	AB4	C	196	220	Right-handed alpha
Helix 14	AB5	C	229	240	Right-handed alpha
Helix 15	AB6	C	244	265	Right-handed alpha
Helix 16	AB7	C	289	297	Right-handed alpha
Helix 17	AB8	C	323	336	Right-handed alpha
Helix 18	AB9	C	347	361	Right-handed alpha
Helix 19	AC1	C	373	390	Right-handed alpha
Helix 20	AC2	C	405	420	Right-handed alpha
Helix 21	AC3	D	3	10	Right-handed alpha
Helix 22	AC4	D	13	22	Right-handed alpha
Helix 23	AC5	D	24	32	Right-handed alpha
Helix 24	AC6	D	42	51	Right-handed alpha
Helix 25	AC7	D	54	66	Right-handed alpha
Helix 26	AC8	D	79	86	Right-handed alpha
Helix 27	AC9	D	100	105	Right-handed alpha
Helix 28	AD1	D	113	126	Right-handed alpha
Helix 29	AD2	D	128	133	Right-handed alpha
Helix 30	AD3	D	143	155	Right-handed alpha
Helix 31	AD4	D	169	192	Right-handed alpha
Helix 32	AD5	D	196	220	Right-handed alpha
Helix 33	AD6	D	229	240	Right-handed alpha
Helix 34	AD7	D	244	266	Right-handed alpha
Helix 35	AD8	D	289	299	Right-handed alpha
Helix 36	AD9	D	310	315	Right-handed alpha
Helix 37	AE1	D	323	336	Right-handed alpha
Helix 38	AE2	D	347	360	Right-handed alpha
Helix 39	AE3	D	373	390	Right-handed alpha
Helix 40	AE4	D	405	420	Right-handed alpha
Helix 41	AE5	E	33	42	Right-handed alpha
Helix 42	AE6	E	57	60	Right-handed 310
Helix 43	AE7	E	68	81	Right-handed alpha
Helix 44	AE8	E	118	130	Right-handed alpha
Helix 45	AE9	E	136	141	Right-handed alpha
Helix 46	AF1	E	152	166	Right-handed alpha
Helix 47	AF2	E	169	190	Right-handed alpha
Helix 48	AF3	E	202	206	Right-handed 310
Helix 49	AF4	E	207	217	Right-handed alpha
Helix 50	AF5	E	230	243	Right-handed alpha
Helix 51	AF6	F	34	42	Right-handed alpha
Helix 52	AF7	F	68	81	Right-handed alpha
Helix 53	AF8	F	118	130	Right-handed alpha
Helix 54	AF9	F	152	167	Right-handed alpha
Helix 55	AG1	F	169	190	Right-handed alpha
Helix 56	AG2	F	202	206	Right-handed 310
Helix 57	AG3	F	208	219	Right-handed alpha
Helix 58	AG4	F	228	231	Right-handed 310
Helix 59	AG5	F	232	243	Right-handed alpha
Helix 60	AG6	A	2	10	Right-handed alpha
Helix 61	AG7	A	14	22	Right-handed alpha
Helix 62	AG8	A	23	32	Right-handed alpha
Helix 63	AG9	A	41	51	Right-handed alpha
Helix 64	AH1	A	54	65	Right-handed alpha
Helix 65	AH2	A	79	85	Right-handed alpha
Helix 66	AH3	A	100	108	Right-handed alpha
Helix 67	AH4	A	113	125	Right-handed alpha
Helix 68	AH5	A	128	133	Right-handed alpha
Helix 69	AH6	A	143	154	Right-handed alpha
Helix 70	AH7	A	169	192	Right-handed alpha
Helix 71	AH8	A	196	220	Right-handed alpha
Helix 72	AH9	A	229	240	Right-handed alpha
Helix 73	AI1	A	244	265	Right-handed alpha
Helix 74	AI2	A	289	297	Right-handed alpha
Helix 75	AI3	A	310	315	Right-handed alpha
Helix 76	AI4	A	323	337	Right-handed alpha
Helix 77	AI5	A	347	360	Right-handed alpha
Helix 78	AI6	A	373	390	Right-handed alpha
Helix 79	AI7	A	405	420	Right-handed alpha
Helix 80	AI8	B	4	10	Right-handed alpha
Helix 81	AI9	B	13	22	Right-handed alpha
Helix 82	AJ1	B	23	32	Right-handed alpha
Helix 83	AJ2	B	39	41	Right-handed 310
Helix 84	AJ3	B	42	51	Right-handed alpha
Helix 85	AJ4	B	54	66	Right-handed alpha
Helix 86	AJ5	B	79	86	Right-handed alpha
Helix 87	AJ6	B	100	105	Right-handed alpha
Helix 88	AJ7	B	113	126	Right-handed alpha
Helix 89	AJ8	B	128	133	Right-handed alpha
Helix 90	AJ9	B	143	155	Right-handed alpha
Helix 91	AK1	B	169	191	Right-handed alpha
Helix 92	AK2	B	196	221	Right-handed alpha
Helix 93	AK3	B	229	240	Right-handed alpha
Helix 94	AK4	B	244	266	Right-handed alpha
Helix 95	AK5	B	289	297	Right-handed alpha
Helix 96	AK6	B	310	315	Right-handed alpha
Helix 97	AK7	B	324	337	Right-handed alpha
Helix 98	AK8	B	346	361	Right-handed alpha
Helix 99	AK9	B	373	390	Right-handed alpha
Helix 100	AL1	B	405	420	Right-handed alpha
Helix 101	AL2	G	33	42	Right-handed alpha
Helix 102	AL3	G	57	61	Right-handed 310
Helix 103	AL4	G	68	81	Right-handed alpha
Helix 104	AL5	G	118	130	Right-handed alpha
Helix 105	AL6	G	152	166	Right-handed alpha
Helix 106	AL7	G	169	190	Right-handed alpha
Helix 107	AL8	G	204	206	Right-handed 310
Helix 108	AL9	G	207	219	Right-handed alpha
Helix 109	AM1	G	230	242	Right-handed alpha
Helix 110	AM2	H	33	42	Right-handed alpha
Helix 111	AM3	H	68	80	Right-handed alpha
Helix 112	AM4	H	113	117	Right-handed 310
Helix 113	AM5	H	118	130	Right-handed alpha
Helix 114	AM6	H	152	166	Right-handed alpha
Helix 115	AM7	H	169	190	Right-handed alpha
Helix 116	AM8	H	202	206	Right-handed 310
Helix 117	AM9	H	209	219	Right-handed alpha
Helix 118	AN1	H	230	242	Right-handed alpha

There are 18 sheets in PDB entry 7YYL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	91	first strand
Strand 2	C	70	73	parallel
Strand 3	C	136	140	parallel
Strand 4	C	159	162	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	306	first strand
Strand 2	C	276	281	parallel
Strand 3	C	364	370	parallel
Strand 4	C	394	399	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	92	first strand
Strand 2	D	70	73	parallel
Strand 3	D	136	140	parallel
Strand 4	D	159	162	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	306	first strand
Strand 2	D	276	281	parallel
Strand 3	D	364	370	parallel
Strand 4	D	396	399	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	29	first strand
Strand 2	E	11	17	anti-parallel
Strand 3	E	2	7	anti-parallel
Strand 4	E	50	55	parallel
Strand 5	E	65	66	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	110	first strand
Strand 2	E	95	100	anti-parallel
Strand 3	E	86	90	anti-parallel
Strand 4	E	197	201	parallel
Strand 5	E	221	223	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	29	first strand
Strand 2	F	11	12	anti-parallel
Strand 3	F	4	8	anti-parallel
Strand 4	F	52	54	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	17	first strand
Strand 2	F	23	25	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	111	first strand
Strand 2	F	95	100	anti-parallel
Strand 3	F	87	90	anti-parallel
Strand 4	F	198	200	parallel
Strand 5	F	222	223	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	92	first strand
Strand 2	A	70	73	parallel
Strand 3	A	136	140	parallel
Strand 4	A	159	162	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	306	first strand
Strand 2	A	276	281	parallel
Strand 3	A	364	370	parallel
Strand 4	A	394	399	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	92	first strand
Strand 2	B	70	73	parallel
Strand 3	B	136	140	parallel
Strand 4	B	159	162	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	306	first strand
Strand 2	B	276	281	parallel
Strand 3	B	364	368	parallel
Strand 4	B	396	397	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	29	first strand
Strand 2	G	11	17	anti-parallel
Strand 3	G	2	7	anti-parallel
Strand 4	G	50	55	parallel
Strand 5	G	65	66	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	106	111	first strand
Strand 2	G	95	100	anti-parallel
Strand 3	G	86	90	anti-parallel
Strand 4	G	198	202	parallel
Strand 5	G	222	223	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	24	29	first strand
Strand 2	H	11	16	anti-parallel
Strand 3	H	4	7	anti-parallel
Strand 4	H	52	55	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	87	90	first strand
Strand 2	H	95	100	anti-parallel
Strand 3	H	106	111	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	198	199	first strand
Strand 2	H	222	223	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YYL

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YYL