Analysis of interatomic Contacts of Structural Units in PDB entry:
7YZ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YZ8 entry

There are 7 chains in PDB entry 7YZ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 365	GLN 559
B	HIS 365	GLN 559
C	SER 364	LYS 558
D	SER 364	LYS 558
E	HIS 365	LYS 558
F	SER 364	LYS 558
G	HIS 365	MET 452

There are105 helices in PDB entry 7YZ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	365	375	Right-handed alpha
Helix 2	AA2	A	398	409	Right-handed alpha
Helix 3	AA3	A	414	428	Right-handed alpha
Helix 4	AA4	A	487	489	Right-handed 310
Helix 5	AA5	A	494	498	Right-handed 310
Helix 6	AA6	A	501	505	Right-handed 310
Helix 7	AA7	A	512	526	Right-handed alpha
Helix 8	AA8	A	531	534	Right-handed 310
Helix 9	AA9	A	535	559	Right-handed alpha
Helix 10	AB1	B	366	375	Right-handed alpha
Helix 11	AB2	B	398	409	Right-handed alpha
Helix 12	AB3	B	414	428	Right-handed alpha
Helix 13	AB4	B	462	466	Right-handed 310
Helix 14	AB5	B	487	489	Right-handed 310
Helix 15	AB6	B	501	505	Right-handed 310
Helix 16	AB7	B	512	526	Right-handed alpha
Helix 17	AB8	B	531	534	Right-handed 310
Helix 18	AB9	B	535	559	Right-handed alpha
Helix 19	AC1	C	365	375	Right-handed alpha
Helix 20	AC2	C	398	409	Right-handed alpha
Helix 21	AC3	C	414	428	Right-handed alpha
Helix 22	AC4	C	487	489	Right-handed 310
Helix 23	AC5	C	494	498	Right-handed 310
Helix 24	AC6	C	501	505	Right-handed 310
Helix 25	AC7	C	512	526	Right-handed alpha
Helix 26	AC8	C	531	534	Right-handed 310
Helix 27	AC9	C	535	557	Right-handed alpha
Helix 28	AD1	D	365	375	Right-handed alpha
Helix 29	AD2	D	398	409	Right-handed alpha
Helix 30	AD3	D	414	428	Right-handed alpha
Helix 31	AD4	D	487	489	Right-handed 310
Helix 32	AD5	D	494	498	Right-handed 310
Helix 33	AD6	D	501	505	Right-handed 310
Helix 34	AD7	D	512	526	Right-handed alpha
Helix 35	AD8	D	531	534	Right-handed 310
Helix 36	AD9	D	535	557	Right-handed alpha
Helix 37	AE1	E	366	375	Right-handed alpha
Helix 38	AE2	E	398	409	Right-handed alpha
Helix 39	AE3	E	414	428	Right-handed alpha
Helix 40	AE4	E	487	489	Right-handed 310
Helix 41	AE5	E	501	505	Right-handed 310
Helix 42	AE6	E	512	526	Right-handed alpha
Helix 43	AE7	E	531	534	Right-handed 310
Helix 44	AE8	E	535	557	Right-handed alpha
Helix 45	AE9	F	365	375	Right-handed alpha
Helix 46	AF1	F	398	409	Right-handed alpha
Helix 47	AF2	F	414	429	Right-handed alpha
Helix 48	AF3	F	487	489	Right-handed 310
Helix 49	AF4	F	494	498	Right-handed 310
Helix 50	AF5	F	501	505	Right-handed 310
Helix 51	AF6	F	512	526	Right-handed alpha
Helix 52	AF7	F	531	534	Right-handed 310
Helix 53	AF8	F	535	558	Right-handed alpha
Helix 54	AF9	G	366	375	Right-handed alpha
Helix 55	AG1	G	398	409	Right-handed alpha
Helix 56	AG2	G	414	428	Right-handed alpha
Helix 57	AG3	G	487	489	Right-handed 310
Helix 58	AG4	G	494	498	Right-handed 310
Helix 59	AG5	G	501	505	Right-handed 310
Helix 60	AG6	G	512	526	Right-handed alpha
Helix 61	AG7	G	531	534	Right-handed 310
Helix 62	AG8	G	535	557	Right-handed alpha
Helix 63	AG9	H	366	375	Right-handed alpha
Helix 64	AH1	H	398	409	Right-handed alpha
Helix 65	AH2	H	414	428	Right-handed alpha
Helix 66	AH3	H	487	489	Right-handed 310
Helix 67	AH4	H	501	505	Right-handed 310
Helix 68	AH5	H	512	526	Right-handed alpha
Helix 69	AH6	H	531	534	Right-handed 310
Helix 70	AH7	H	535	559	Right-handed alpha
Helix 71	AH8	I	365	375	Right-handed alpha
Helix 72	AH9	I	398	409	Right-handed alpha
Helix 73	AI1	I	414	428	Right-handed alpha
Helix 74	AI2	I	487	489	Right-handed 310
Helix 75	AI3	I	494	498	Right-handed 310
Helix 76	AI4	I	501	505	Right-handed 310
Helix 77	AI5	I	512	526	Right-handed alpha
Helix 78	AI6	I	531	534	Right-handed 310
Helix 79	AI7	I	535	558	Right-handed alpha
Helix 80	AI8	J	366	375	Right-handed alpha
Helix 81	AI9	J	398	409	Right-handed alpha
Helix 82	AJ1	J	414	428	Right-handed alpha
Helix 83	AJ2	J	487	489	Right-handed 310
Helix 84	AJ3	J	494	498	Right-handed 310
Helix 85	AJ4	J	501	505	Right-handed 310
Helix 86	AJ5	J	512	526	Right-handed alpha
Helix 87	AJ6	J	531	534	Right-handed 310
Helix 88	AJ7	J	535	558	Right-handed alpha
Helix 89	AJ8	K	366	375	Right-handed alpha
Helix 90	AJ9	K	398	409	Right-handed alpha
Helix 91	AK1	K	414	428	Right-handed alpha
Helix 92	AK2	K	487	489	Right-handed 310
Helix 93	AK3	K	501	505	Right-handed 310
Helix 94	AK4	K	512	526	Right-handed alpha
Helix 95	AK5	K	531	534	Right-handed 310
Helix 96	AK6	K	535	558	Right-handed alpha
Helix 97	AK7	L	367	375	Right-handed alpha
Helix 98	AK8	L	398	409	Right-handed alpha
Helix 99	AK9	L	414	428	Right-handed alpha
Helix 100	AL1	L	487	489	Right-handed 310
Helix 101	AL2	L	494	498	Right-handed 310
Helix 102	AL3	L	501	505	Right-handed 310
Helix 103	AL4	L	512	526	Right-handed alpha
Helix 104	AL5	L	531	534	Right-handed 310
Helix 105	AL6	L	535	557	Right-handed alpha

There are 12 sheets in PDB entry 7YZ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	411	first strand
Strand 2	A	474	485	anti-parallel
Strand 3	A	445	452	anti-parallel
Strand 4	A	434	440	anti-parallel
Strand 5	A	390	396	parallel
Strand 6	A	510	511	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	411	first strand
Strand 2	B	474	485	anti-parallel
Strand 3	B	445	452	anti-parallel
Strand 4	B	434	440	anti-parallel
Strand 5	B	390	396	parallel
Strand 6	B	510	511	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	411	first strand
Strand 2	C	474	485	anti-parallel
Strand 3	C	445	452	anti-parallel
Strand 4	C	434	440	anti-parallel
Strand 5	C	390	396	parallel
Strand 6	C	510	511	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	411	first strand
Strand 2	D	474	485	anti-parallel
Strand 3	D	445	452	anti-parallel
Strand 4	D	434	440	anti-parallel
Strand 5	D	390	396	parallel
Strand 6	D	510	511	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	410	411	first strand
Strand 2	E	474	485	anti-parallel
Strand 3	E	445	452	anti-parallel
Strand 4	E	434	440	anti-parallel
Strand 5	E	390	396	parallel
Strand 6	E	510	511	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	410	411	first strand
Strand 2	F	474	485	anti-parallel
Strand 3	F	445	452	anti-parallel
Strand 4	F	434	440	anti-parallel
Strand 5	F	390	396	parallel
Strand 6	F	510	511	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	410	411	first strand
Strand 2	G	474	485	anti-parallel
Strand 3	G	445	452	anti-parallel
Strand 4	G	434	440	anti-parallel
Strand 5	G	390	396	parallel
Strand 6	G	510	511	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	410	411	first strand
Strand 2	H	474	485	anti-parallel
Strand 3	H	445	452	anti-parallel
Strand 4	H	434	440	anti-parallel
Strand 5	H	390	396	parallel
Strand 6	H	510	511	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	410	411	first strand
Strand 2	I	474	485	anti-parallel
Strand 3	I	445	452	anti-parallel
Strand 4	I	434	440	anti-parallel
Strand 5	I	390	396	parallel
Strand 6	I	510	511	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	410	411	first strand
Strand 2	J	474	485	anti-parallel
Strand 3	J	445	452	anti-parallel
Strand 4	J	434	440	anti-parallel
Strand 5	J	390	396	parallel
Strand 6	J	510	511	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	410	411	first strand
Strand 2	K	474	485	anti-parallel
Strand 3	K	445	452	anti-parallel
Strand 4	K	434	440	anti-parallel
Strand 5	K	390	396	parallel
Strand 6	K	510	511	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	410	411	first strand
Strand 2	L	474	485	anti-parallel
Strand 3	L	445	452	anti-parallel
Strand 4	L	434	440	anti-parallel
Strand 5	L	390	396	parallel
Strand 6	L	510	511	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YZ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YZ8