Analysis of interatomic Contacts of Structural Units in PDB entry:
7YZ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YZ9 entry

There are 2 chains in PDB entry 7YZ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 46ALA 232
B
 GLN 6HIS 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 7YZ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 71Right-handed alpha
Helix 2
AA2
A
72 95Right-handed alpha
Helix 3
AA3
A
118 137Right-handed alpha
Helix 4
AA4
A
172 184Right-handed alpha
Helix 5
AA5
A
194 201Right-handed alpha
Helix 6
AA6
B
33 37Right-handed 310
Helix 7
AA7
B
91 95Right-handed 310
Helix 8
AA8
B
102 109Right-handed alpha
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There are 4 sheets in PDB entry 7YZ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 102first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
47 61anti-parallel
Strand 4
A
147 160anti-parallel
Strand 5
A
168 171anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 102first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
47 61anti-parallel
Strand 4
A
147 160anti-parallel
Strand 5
A
190 193parallel
Strand 6
A
222 228anti-parallel
Strand 7
A
204 208anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
82 87anti-parallel
Strand 4
B
72 77anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
115 119parallel
Strand 3
B
96 101anti-parallel
Strand 4
B
39 44anti-parallel
Strand 5
B
51 56anti-parallel
Strand 6
B
62 64anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il