Analysis of interatomic Contacts of Structural Units in PDB entry:
7YZP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YZP entry

There are 5 chains in PDB entry 7YZP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	C 3	G 61
A	MET 1	ALA 395
B	MET 1	ALA 395
C	MET 1	VAL 1047
D	MET 1	VAL 1047

There are 53 helices in PDB entry 7YZP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	39	Right-handed alpha
Helix 2	AA2	A	56	74	Right-handed alpha
Helix 3	AA3	A	86	98	Right-handed alpha
Helix 4	AA4	A	133	138	Right-handed alpha
Helix 5	AA5	A	147	173	Right-handed alpha
Helix 6	AA6	A	285	294	Right-handed alpha
Helix 7	AA7	A	295	298	Right-handed 310
Helix 8	AA8	A	319	329	Right-handed alpha
Helix 9	AA9	A	350	354	Right-handed 310
Helix 10	AB1	A	361	373	Right-handed alpha
Helix 11	AB2	A	377	393	Right-handed alpha
Helix 12	AB3	B	20	39	Right-handed alpha
Helix 13	AB4	B	56	74	Right-handed alpha
Helix 14	AB5	B	86	92	Right-handed alpha
Helix 15	AB6	B	93	100	Right-handed alpha
Helix 16	AB7	B	152	173	Right-handed alpha
Helix 17	AB8	B	245	249	Right-handed 310
Helix 18	AB9	B	285	294	Right-handed alpha
Helix 19	AC1	B	295	297	Right-handed 310
Helix 20	AC2	B	316	329	Right-handed alpha
Helix 21	AC3	B	361	370	Right-handed alpha
Helix 22	AC4	B	371	373	Right-handed 310
Helix 23	AC5	B	378	395	Right-handed alpha
Helix 24	AC6	C	44	56	Right-handed alpha
Helix 25	AC7	C	101	104	Right-handed 310
Helix 26	AC8	C	128	141	Right-handed alpha
Helix 27	AC9	C	143	149	Right-handed alpha
Helix 28	AD1	C	159	164	Right-handed alpha
Helix 29	AD2	C	165	177	Right-handed alpha
Helix 30	AD3	C	180	201	Right-handed alpha
Helix 31	AD4	C	203	210	Right-handed alpha
Helix 32	AD5	C	214	235	Right-handed alpha
Helix 33	AD6	C	836	887	Right-handed alpha
Helix 34	AD7	C	893	900	Right-handed alpha
Helix 35	AD8	C	900	917	Right-handed alpha
Helix 36	AD9	C	952	971	Right-handed alpha
Helix 37	AE1	C	985	989	Right-handed 310
Helix 38	AE2	C	990	1005	Right-handed alpha
Helix 39	AE3	C	1017	1024	Right-handed alpha
Helix 40	AE4	D	24	29	Right-handed alpha
Helix 41	AE5	D	44	56	Right-handed alpha
Helix 42	AE6	D	128	141	Right-handed alpha
Helix 43	AE7	D	143	148	Right-handed alpha
Helix 44	AE8	D	165	176	Right-handed alpha
Helix 45	AE9	D	180	208	Right-handed alpha
Helix 46	AF1	D	214	234	Right-handed alpha
Helix 47	AF2	D	836	885	Right-handed alpha
Helix 48	AF3	D	895	919	Right-handed alpha
Helix 49	AF4	D	949	951	Right-handed 310
Helix 50	AF5	D	952	971	Right-handed alpha
Helix 51	AF6	D	990	1006	Right-handed alpha
Helix 52	AF7	D	1017	1021	Right-handed 310
Helix 53	AF8	D	1043	1046	Right-handed 310

There are 15 sheets in PDB entry 7YZP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	104	first strand
Strand 2	A	76	79	parallel
Strand 3	A	42	45	parallel
Strand 4	A	2	6	parallel
Strand 5	A	254	261	anti-parallel
Strand 6	A	264	272	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	18	19	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	122	127	anti-parallel
Strand 3	A	179	183	parallel
Strand 4	A	217	220	parallel
Strand 5	A	235	237	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	283	first strand
Strand 2	A	305	310	parallel
Strand 3	A	333	335	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	104	first strand
Strand 2	B	76	79	parallel
Strand 3	B	42	45	parallel
Strand 4	B	2	6	parallel
Strand 5	B	255	261	anti-parallel
Strand 6	B	264	271	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	116	first strand
Strand 2	B	122	127	anti-parallel
Strand 3	B	179	183	parallel
Strand 4	B	217	220	parallel
Strand 5	B	235	237	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	284	first strand
Strand 2	B	305	311	parallel
Strand 3	B	333	340	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	78	87	anti-parallel
Strand 3	C	5	9	anti-parallel
Strand 4	C	17	21	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	78	87	anti-parallel
Strand 3	C	90	99	anti-parallel
Strand 4	C	113	118	anti-parallel
Strand 5	C	124	126	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	979	982	first strand
Strand 2	C	1010	1014	parallel
Strand 3	C	33	35	parallel
Strand 4	C	1026	1027	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	922	926	first strand
Strand 2	C	934	938	anti-parallel
Strand 3	C	944	946	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1031	1032	first strand
Strand 2	C	1039	1040	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	21	first strand
Strand 2	D	3	9	anti-parallel
Strand 3	D	78	87	anti-parallel
Strand 4	D	90	99	anti-parallel
Strand 5	D	113	118	anti-parallel
Strand 6	D	124	126	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	979	982	parallel
Strand 3	D	1010	1014	parallel
Strand 4	D	33	36	parallel
Strand 5	D	1027	1032	parallel
Strand 6	D	1039	1041	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	922	926	first strand
Strand 2	D	934	938	anti-parallel
Strand 3	D	945	947	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YZP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YZP