Analysis of interatomic Contacts of Structural Units in PDB entry:
7YZQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YZQ entry

There are 8 chains in PDB entry 7YZQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASP 2	LYS 421
D	MET 1	LYS 421
E	MET 1	THR 243
F	MET 1	THR 243
A	MET 1	LYS 421
B	GLY 0	LYS 421
G	MET 1	THR 243
H	MET 1	THR 243

There are134 helices in PDB entry 7YZQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	2	10	Right-handed alpha
Helix 2	AA2	C	13	22	Right-handed alpha
Helix 3	AA3	C	23	32	Right-handed alpha
Helix 4	AA4	C	41	51	Right-handed alpha
Helix 5	AA5	C	54	66	Right-handed alpha
Helix 6	AA6	C	79	86	Right-handed alpha
Helix 7	AA7	C	100	105	Right-handed alpha
Helix 8	AA8	C	113	126	Right-handed alpha
Helix 9	AA9	C	128	134	Right-handed alpha
Helix 10	AB1	C	143	154	Right-handed alpha
Helix 11	AB2	C	169	192	Right-handed alpha
Helix 12	AB3	C	196	221	Right-handed alpha
Helix 13	AB4	C	229	240	Right-handed alpha
Helix 14	AB5	C	244	265	Right-handed alpha
Helix 15	AB6	C	289	298	Right-handed alpha
Helix 16	AB7	C	310	315	Right-handed alpha
Helix 17	AB8	C	323	336	Right-handed alpha
Helix 18	AB9	C	346	360	Right-handed alpha
Helix 19	AC1	C	373	390	Right-handed alpha
Helix 20	AC2	C	405	421	Right-handed alpha
Helix 21	AC3	D	2	10	Right-handed alpha
Helix 22	AC4	D	13	22	Right-handed alpha
Helix 23	AC5	D	23	32	Right-handed alpha
Helix 24	AC6	D	39	41	Right-handed 310
Helix 25	AC7	D	42	51	Right-handed alpha
Helix 26	AC8	D	54	66	Right-handed alpha
Helix 27	AC9	D	79	86	Right-handed alpha
Helix 28	AD1	D	97	99	Right-handed 310
Helix 29	AD2	D	100	105	Right-handed alpha
Helix 30	AD3	D	113	125	Right-handed alpha
Helix 31	AD4	D	128	134	Right-handed alpha
Helix 32	AD5	D	143	154	Right-handed alpha
Helix 33	AD6	D	169	192	Right-handed alpha
Helix 34	AD7	D	196	221	Right-handed alpha
Helix 35	AD8	D	229	240	Right-handed alpha
Helix 36	AD9	D	244	264	Right-handed alpha
Helix 37	AE1	D	289	298	Right-handed alpha
Helix 38	AE2	D	310	315	Right-handed alpha
Helix 39	AE3	D	323	337	Right-handed alpha
Helix 40	AE4	D	346	360	Right-handed alpha
Helix 41	AE5	D	373	390	Right-handed alpha
Helix 42	AE6	D	402	404	Right-handed 310
Helix 43	AE7	D	405	420	Right-handed alpha
Helix 44	AE8	E	33	43	Right-handed alpha
Helix 45	AE9	E	55	60	Right-handed 310
Helix 46	AF1	E	68	81	Right-handed alpha
Helix 47	AF2	E	113	117	Right-handed 310
Helix 48	AF3	E	118	130	Right-handed alpha
Helix 49	AF4	E	135	139	Right-handed 310
Helix 50	AF5	E	152	166	Right-handed alpha
Helix 51	AF6	E	169	189	Right-handed alpha
Helix 52	AF7	E	202	206	Right-handed 310
Helix 53	AF8	E	207	219	Right-handed alpha
Helix 54	AF9	E	227	229	Right-handed 310
Helix 55	AG1	E	230	243	Right-handed alpha
Helix 56	AG2	F	33	43	Right-handed alpha
Helix 57	AG3	F	68	81	Right-handed alpha
Helix 58	AG4	F	113	117	Right-handed 310
Helix 59	AG5	F	118	130	Right-handed alpha
Helix 60	AG6	F	135	141	Right-handed alpha
Helix 61	AG7	F	152	166	Right-handed alpha
Helix 62	AG8	F	169	189	Right-handed alpha
Helix 63	AG9	F	202	206	Right-handed 310
Helix 64	AH1	F	207	219	Right-handed alpha
Helix 65	AH2	F	227	229	Right-handed 310
Helix 66	AH3	F	230	243	Right-handed alpha
Helix 67	AH4	A	2	10	Right-handed alpha
Helix 68	AH5	A	13	22	Right-handed alpha
Helix 69	AH6	A	23	32	Right-handed alpha
Helix 70	AH7	A	39	41	Right-handed 310
Helix 71	AH8	A	42	51	Right-handed alpha
Helix 72	AH9	A	54	66	Right-handed alpha
Helix 73	AI1	A	79	86	Right-handed alpha
Helix 74	AI2	A	97	99	Right-handed 310
Helix 75	AI3	A	100	105	Right-handed alpha
Helix 76	AI4	A	113	125	Right-handed alpha
Helix 77	AI5	A	128	134	Right-handed alpha
Helix 78	AI6	A	143	154	Right-handed alpha
Helix 79	AI7	A	169	192	Right-handed alpha
Helix 80	AI8	A	196	221	Right-handed alpha
Helix 81	AI9	A	229	240	Right-handed alpha
Helix 82	AJ1	A	244	265	Right-handed alpha
Helix 83	AJ2	A	289	298	Right-handed alpha
Helix 84	AJ3	A	310	315	Right-handed alpha
Helix 85	AJ4	A	323	337	Right-handed alpha
Helix 86	AJ5	A	346	360	Right-handed alpha
Helix 87	AJ6	A	373	390	Right-handed alpha
Helix 88	AJ7	A	405	421	Right-handed alpha
Helix 89	AJ8	B	1	10	Right-handed alpha
Helix 90	AJ9	B	13	22	Right-handed alpha
Helix 91	AK1	B	23	32	Right-handed alpha
Helix 92	AK2	B	39	41	Right-handed 310
Helix 93	AK3	B	42	51	Right-handed alpha
Helix 94	AK4	B	54	66	Right-handed alpha
Helix 95	AK5	B	79	86	Right-handed alpha
Helix 96	AK6	B	97	99	Right-handed 310
Helix 97	AK7	B	100	105	Right-handed alpha
Helix 98	AK8	B	113	125	Right-handed alpha
Helix 99	AK9	B	128	134	Right-handed alpha
Helix 100	AL1	B	143	154	Right-handed alpha
Helix 101	AL2	B	169	192	Right-handed alpha
Helix 102	AL3	B	196	221	Right-handed alpha
Helix 103	AL4	B	229	240	Right-handed alpha
Helix 104	AL5	B	244	265	Right-handed alpha
Helix 105	AL6	B	289	298	Right-handed alpha
Helix 106	AL7	B	310	315	Right-handed alpha
Helix 107	AL8	B	323	337	Right-handed alpha
Helix 108	AL9	B	346	360	Right-handed alpha
Helix 109	AM1	B	373	390	Right-handed alpha
Helix 110	AM2	B	402	404	Right-handed 310
Helix 111	AM3	B	405	420	Right-handed alpha
Helix 112	AM4	G	33	42	Right-handed alpha
Helix 113	AM5	G	55	60	Right-handed 310
Helix 114	AM6	G	68	81	Right-handed alpha
Helix 115	AM7	G	113	117	Right-handed 310
Helix 116	AM8	G	118	130	Right-handed alpha
Helix 117	AM9	G	136	141	Right-handed alpha
Helix 118	AN1	G	152	166	Right-handed alpha
Helix 119	AN2	G	169	189	Right-handed alpha
Helix 120	AN3	G	202	206	Right-handed 310
Helix 121	AN4	G	207	219	Right-handed alpha
Helix 122	AN5	G	227	229	Right-handed 310
Helix 123	AN6	G	230	243	Right-handed alpha
Helix 124	AN7	H	33	43	Right-handed alpha
Helix 125	AN8	H	68	81	Right-handed alpha
Helix 126	AN9	H	113	117	Right-handed 310
Helix 127	AO1	H	118	131	Right-handed alpha
Helix 128	AO2	H	135	141	Right-handed alpha
Helix 129	AO3	H	152	166	Right-handed alpha
Helix 130	AO4	H	169	189	Right-handed alpha
Helix 131	AO5	H	202	206	Right-handed 310
Helix 132	AO6	H	207	219	Right-handed alpha
Helix 133	AO7	H	227	229	Right-handed 310
Helix 134	AO8	H	230	243	Right-handed alpha

There are 16 sheets in PDB entry 7YZQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	92	first strand
Strand 2	C	70	73	parallel
Strand 3	C	136	140	parallel
Strand 4	C	159	162	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	306	first strand
Strand 2	C	276	281	parallel
Strand 3	C	364	370	parallel
Strand 4	C	394	399	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	92	first strand
Strand 2	D	70	73	parallel
Strand 3	D	136	140	parallel
Strand 4	D	159	162	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	306	first strand
Strand 2	D	276	281	parallel
Strand 3	D	364	370	parallel
Strand 4	D	394	399	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	29	first strand
Strand 2	E	11	17	anti-parallel
Strand 3	E	2	7	anti-parallel
Strand 4	E	50	54	parallel
Strand 5	E	65	66	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	111	first strand
Strand 2	E	95	100	anti-parallel
Strand 3	E	86	90	anti-parallel
Strand 4	E	197	201	parallel
Strand 5	E	221	223	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	29	first strand
Strand 2	F	11	17	anti-parallel
Strand 3	F	2	7	anti-parallel
Strand 4	F	50	54	parallel
Strand 5	F	65	66	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	111	first strand
Strand 2	F	95	100	anti-parallel
Strand 3	F	86	90	anti-parallel
Strand 4	F	197	201	parallel
Strand 5	F	221	223	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	92	first strand
Strand 2	A	70	73	parallel
Strand 3	A	136	140	parallel
Strand 4	A	159	162	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	306	first strand
Strand 2	A	276	281	parallel
Strand 3	A	364	370	parallel
Strand 4	A	394	399	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	92	first strand
Strand 2	B	70	73	parallel
Strand 3	B	136	140	parallel
Strand 4	B	159	162	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	306	first strand
Strand 2	B	276	281	parallel
Strand 3	B	364	370	parallel
Strand 4	B	394	399	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	29	first strand
Strand 2	G	11	17	anti-parallel
Strand 3	G	2	7	anti-parallel
Strand 4	G	50	54	parallel
Strand 5	G	65	66	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	106	111	first strand
Strand 2	G	95	100	anti-parallel
Strand 3	G	86	90	anti-parallel
Strand 4	G	197	201	parallel
Strand 5	G	221	223	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	29	first strand
Strand 2	H	11	17	anti-parallel
Strand 3	H	2	7	anti-parallel
Strand 4	H	50	54	parallel
Strand 5	H	65	66	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	106	111	first strand
Strand 2	H	95	100	anti-parallel
Strand 3	H	86	90	anti-parallel
Strand 4	H	197	201	parallel
Strand 5	H	221	223	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YZQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YZQ