Analysis of interatomic Contacts of Structural Units in PDB entry:
7YZT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7YZT entry

There are 3 chains in PDB entry 7YZT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	SER 307
B	GLY 2	SER 307
C	GLY 2	SER 307

There are 33 helices in PDB entry 7YZT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	49	Right-handed alpha
Helix 2	AA2	A	61	69	Right-handed alpha
Helix 3	AA3	A	103	116	Right-handed alpha
Helix 4	AA4	A	151	160	Right-handed alpha
Helix 5	AA5	A	162	169	Right-handed 310
Helix 6	AA6	A	182	188	Right-handed alpha
Helix 7	AA7	A	190	199	Right-handed alpha
Helix 8	AA8	A	217	223	Right-handed alpha
Helix 9	AA9	A	258	271	Right-handed alpha
Helix 10	AB1	A	279	283	Right-handed 310
Helix 11	AB2	A	297	307	Right-handed alpha
Helix 12	AB3	B	27	49	Right-handed alpha
Helix 13	AB4	B	61	69	Right-handed alpha
Helix 14	AB5	B	103	116	Right-handed alpha
Helix 15	AB6	B	151	160	Right-handed alpha
Helix 16	AB7	B	162	169	Right-handed 310
Helix 17	AB8	B	182	188	Right-handed alpha
Helix 18	AB9	B	190	199	Right-handed alpha
Helix 19	AC1	B	217	223	Right-handed alpha
Helix 20	AC2	B	258	271	Right-handed alpha
Helix 21	AC3	B	279	283	Right-handed 310
Helix 22	AC4	B	297	307	Right-handed alpha
Helix 23	AC5	C	27	49	Right-handed alpha
Helix 24	AC6	C	61	69	Right-handed alpha
Helix 25	AC7	C	103	116	Right-handed alpha
Helix 26	AC8	C	151	160	Right-handed alpha
Helix 27	AC9	C	162	169	Right-handed 310
Helix 28	AD1	C	182	188	Right-handed alpha
Helix 29	AD2	C	190	199	Right-handed alpha
Helix 30	AD3	C	217	223	Right-handed alpha
Helix 31	AD4	C	258	271	Right-handed alpha
Helix 32	AD5	C	279	283	Right-handed 310
Helix 33	AD6	C	297	307	Right-handed alpha

There are 15 sheets in PDB entry 7YZT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	60	first strand
Strand 2	A	95	101	anti-parallel
Strand 3	A	15	22	anti-parallel
Strand 4	A	123	131	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	87	88	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	236	first strand
Strand 2	A	248	256	anti-parallel
Strand 3	A	172	181	anti-parallel
Strand 4	A	285	287	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	242	first strand
Strand 2	A	248	256	anti-parallel
Strand 3	A	172	181	anti-parallel
Strand 4	A	291	295	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	225	first strand
Strand 2	A	231	232	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	60	first strand
Strand 2	B	95	101	anti-parallel
Strand 3	B	15	22	anti-parallel
Strand 4	B	123	131	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	87	88	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	236	first strand
Strand 2	B	248	256	anti-parallel
Strand 3	B	172	181	anti-parallel
Strand 4	B	285	287	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	242	first strand
Strand 2	B	248	256	anti-parallel
Strand 3	B	172	181	anti-parallel
Strand 4	B	291	295	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	231	232	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	60	first strand
Strand 2	C	95	101	anti-parallel
Strand 3	C	15	22	anti-parallel
Strand 4	C	123	131	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	87	88	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	236	first strand
Strand 2	C	248	256	anti-parallel
Strand 3	C	172	181	anti-parallel
Strand 4	C	285	287	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	242	first strand
Strand 2	C	248	256	anti-parallel
Strand 3	C	172	181	anti-parallel
Strand 4	C	291	295	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	231	232	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7YZT

Analysis of interatomic Contacts of Structural Units in PDB entry:
7YZT