Analysis of interatomic Contacts of Structural Units in PDB entry:
7YZU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7YZU entry

There is 1 chain in PDB entry 7YZU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LEU 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7YZU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 29Right-handed alpha
Helix 2
AA2
A
42 56Right-handed alpha
Helix 3
AA3
A
70 78Right-handed alpha
Helix 4
AA4
A
92 99Right-handed alpha
Helix 5
AA5
A
121 128Right-handed alpha
Helix 6
AA6
A
134 150Right-handed alpha
Helix 7
AA7
A
165 178Right-handed alpha
Helix 8
AA8
A
191 208Right-handed alpha
Helix 9
AA9
A
214 218Right-handed 310
Helix 10
AB1
A
219 229Right-handed alpha
Helix 11
AB2
A
240 246Right-handed alpha
Helix 12
AB3
A
286 298Right-handed alpha
Helix 13
AB4
A
299 311Right-handed alpha
Helix 14
AB5
A
316 321Right-handed 310
Helix 15
AB6
A
322 329Right-handed alpha
Helix 16
AB7
A
330 334Right-handed 310
Helix 17
AB8
A
335 342Right-handed alpha
Helix 18
AB9
A
350 367Right-handed alpha
Helix 19
AC1
A
371 387Right-handed alpha
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There are 3 sheets in PDB entry 7YZU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
5 10parallel
Strand 3
A
63 67parallel
Strand 4
A
273 280anti-parallel
Strand 5
A
108 114anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
104 105anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
232 237parallel
Strand 3
A
116 120anti-parallel
Strand 4
A
256 259anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il