Analysis of interatomic Contacts of Structural Units in PDB entry:
7Z04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Z04 entry

There are 6 chains in PDB entry 7Z04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 21	TYR 1016
B	PHE 15	SER 303
G	ASP 17	LYS 48
C	LYS 21	TYR 1016
D	PHE 15	SER 303
E	ASP 17	LYS 48

There are105 helices in PDB entry 7Z04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	28	Right-handed alpha
Helix 2	AA2	A	40	48	Right-handed alpha
Helix 3	AA3	A	60	65	Right-handed alpha
Helix 4	AA4	A	81	90	Right-handed 310
Helix 5	AA5	A	93	114	Right-handed alpha
Helix 6	AA6	A	123	140	Right-handed alpha
Helix 7	AA7	A	142	146	Right-handed 310
Helix 8	AA8	A	208	213	Right-handed alpha
Helix 9	AA9	A	254	257	Right-handed 310
Helix 10	AB1	A	258	269	Right-handed alpha
Helix 11	AB2	A	275	307	Right-handed alpha
Helix 12	AB3	A	309	314	Right-handed alpha
Helix 13	AB4	A	316	321	Right-handed alpha
Helix 14	AB5	A	328	344	Right-handed alpha
Helix 15	AB6	A	345	347	Right-handed 310
Helix 16	AB7	A	355	360	Right-handed alpha
Helix 17	AB8	A	361	363	Right-handed 310
Helix 18	AB9	A	408	421	Right-handed alpha
Helix 19	AC1	A	444	457	Right-handed alpha
Helix 20	AC2	A	460	465	Right-handed alpha
Helix 21	AC3	A	503	509	Right-handed alpha
Helix 22	AC4	A	524	533	Right-handed alpha
Helix 23	AC5	A	534	539	Right-handed alpha
Helix 24	AC6	A	591	602	Right-handed alpha
Helix 25	AC7	A	615	625	Right-handed alpha
Helix 26	AC8	A	635	641	Right-handed alpha
Helix 27	AC9	A	644	648	Right-handed 310
Helix 28	AD1	A	660	665	Right-handed alpha
Helix 29	AD2	A	667	678	Right-handed alpha
Helix 30	AD3	A	687	699	Right-handed alpha
Helix 31	AD4	A	714	721	Right-handed alpha
Helix 32	AD5	A	749	789	Right-handed alpha
Helix 33	AD6	A	796	802	Right-handed alpha
Helix 34	AD7	A	808	815	Right-handed alpha
Helix 35	AD8	A	816	818	Right-handed 310
Helix 36	AD9	A	839	847	Right-handed alpha
Helix 37	AE1	A	849	870	Right-handed alpha
Helix 38	AE2	A	873	878	Right-handed 310
Helix 39	AE3	A	879	885	Right-handed alpha
Helix 40	AE4	A	900	910	Right-handed alpha
Helix 41	AE5	A	912	931	Right-handed alpha
Helix 42	AE6	A	936	941	Right-handed alpha
Helix 43	AE7	A	944	964	Right-handed alpha
Helix 44	AE8	A	966	971	Right-handed alpha
Helix 45	AE9	A	977	983	Right-handed 310
Helix 46	AF1	A	984	1005	Right-handed alpha
Helix 47	AF2	A	1010	1015	Right-handed alpha
Helix 48	AF3	B	31	60	Right-handed alpha
Helix 49	AF4	B	69	73	Right-handed 310
Helix 50	AF5	B	98	109	Right-handed alpha
Helix 51	AF6	B	110	112	Right-handed 310
Helix 52	AF7	B	152	156	Right-handed 310
Helix 53	AF8	B	239	243	Right-handed 310
Helix 54	AF9	G	22	45	Right-handed alpha
Helix 55	AG1	C	22	27	Right-handed alpha
Helix 56	AG2	C	40	47	Right-handed alpha
Helix 57	AG3	C	63	68	Right-handed alpha
Helix 58	AG4	C	83	87	Right-handed 310
Helix 59	AG5	C	92	111	Right-handed alpha
Helix 60	AG6	C	121	141	Right-handed alpha
Helix 61	AG7	C	146	152	Right-handed alpha
Helix 62	AG8	C	208	213	Right-handed alpha
Helix 63	AG9	C	254	257	Right-handed 310
Helix 64	AH1	C	258	268	Right-handed alpha
Helix 65	AH2	C	275	307	Right-handed alpha
Helix 66	AH3	C	309	320	Right-handed alpha
Helix 67	AH4	C	328	347	Right-handed alpha
Helix 68	AH5	C	354	358	Right-handed 310
Helix 69	AH6	C	359	363	Right-handed 310
Helix 70	AH7	C	408	421	Right-handed alpha
Helix 71	AH8	C	443	457	Right-handed alpha
Helix 72	AH9	C	460	465	Right-handed alpha
Helix 73	AI1	C	503	509	Right-handed alpha
Helix 74	AI2	C	525	541	Right-handed alpha
Helix 75	AI3	C	591	602	Right-handed alpha
Helix 76	AI4	C	613	624	Right-handed alpha
Helix 77	AI5	C	633	641	Right-handed alpha
Helix 78	AI6	C	649	653	Right-handed 310
Helix 79	AI7	C	660	664	Right-handed alpha
Helix 80	AI8	C	667	677	Right-handed alpha
Helix 81	AI9	C	687	701	Right-handed alpha
Helix 82	AJ1	C	714	721	Right-handed alpha
Helix 83	AJ2	C	732	739	Right-handed alpha
Helix 84	AJ3	C	748	789	Right-handed alpha
Helix 85	AJ4	C	796	805	Right-handed alpha
Helix 86	AJ5	C	808	814	Right-handed alpha
Helix 87	AJ6	C	839	847	Right-handed alpha
Helix 88	AJ7	C	849	869	Right-handed alpha
Helix 89	AJ8	C	872	876	Right-handed 310
Helix 90	AJ9	C	879	884	Right-handed alpha
Helix 91	AK1	C	901	910	Right-handed alpha
Helix 92	AK2	C	912	930	Right-handed alpha
Helix 93	AK3	C	936	941	Right-handed alpha
Helix 94	AK4	C	944	963	Right-handed alpha
Helix 95	AK5	C	966	971	Right-handed alpha
Helix 96	AK6	C	980	983	Right-handed 310
Helix 97	AK7	C	984	1005	Right-handed alpha
Helix 98	AK8	C	1008	1015	Right-handed alpha
Helix 99	AK9	D	31	58	Right-handed alpha
Helix 100	AL1	D	69	73	Right-handed 310
Helix 101	AL2	D	98	109	Right-handed alpha
Helix 102	AL3	D	152	156	Right-handed 310
Helix 103	AL4	D	231	235	Right-handed 310
Helix 104	AL5	D	246	251	Right-handed alpha
Helix 105	AL6	E	22	46	Right-handed alpha

There are 22 sheets in PDB entry 7Z04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	165	first strand
Strand 2	A	170	172	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	241	253	anti-parallel
Strand 3	A	195	207	anti-parallel
Strand 4	A	218	220	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	351	first strand
Strand 2	A	741	743	anti-parallel
Strand 3	A	723	727	parallel
Strand 4	A	706	708	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	605	606	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	380	385	anti-parallel
Strand 3	A	576	585	anti-parallel
Strand 4	A	544	553	anti-parallel
Strand 5	A	496	502	anti-parallel
Strand 6	A	482	486	anti-parallel
Strand 7	A	472	473	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	380	385	anti-parallel
Strand 3	A	576	585	anti-parallel
Strand 4	A	511	516	parallel
Strand 5	A	519	522	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	440	441	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	608	610	first strand
Strand 2	A	680	684	parallel
Strand 3	A	655	659	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	79	first strand
Strand 2	B	175	180	anti-parallel
Strand 3	B	258	263	anti-parallel
Strand 4	B	227	230	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	296	301	parallel
Strand 3	B	272	278	anti-parallel
Strand 4	B	211	214	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	148	149	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	166	first strand
Strand 2	C	169	170	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	187	first strand
Strand 2	C	241	251	anti-parallel
Strand 3	C	196	207	anti-parallel
Strand 4	C	218	219	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	187	first strand
Strand 2	C	241	251	anti-parallel
Strand 3	C	196	207	anti-parallel
Strand 4	C	235	236	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	350	first strand
Strand 2	C	742	743	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	655	659	first strand
Strand 2	C	680	684	parallel
Strand 3	C	605	609	parallel
Strand 4	C	365	368	parallel
Strand 5	C	705	708	parallel
Strand 6	C	723	725	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	390	392	first strand
Strand 2	C	380	385	anti-parallel
Strand 3	C	577	585	anti-parallel
Strand 4	C	544	552	anti-parallel
Strand 5	C	497	502	anti-parallel
Strand 6	C	481	486	anti-parallel
Strand 7	C	472	473	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	426	first strand
Strand 2	C	440	441	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	891	892	first strand
Strand 2	C	898	899	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	79	first strand
Strand 2	D	175	179	anti-parallel
Strand 3	D	260	263	anti-parallel
Strand 4	D	227	230	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	296	300	parallel
Strand 3	D	272	278	anti-parallel
Strand 4	D	209	214	anti-parallel
Strand 5	D	237	238	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	D	148	149	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Z04

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Z04