Analysis of interatomic Contacts of Structural Units in PDB entry:
7Z38

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Z38 entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 7Z38 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 10	ASP 691
B	GLU 10	ILE 690
C	LEU 406	LYS 615
D	VAL 2	VAL 12
D	ASP 14	ALA 274

There are 72 helices in PDB entry 7Z38. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	31	Right-handed alpha
Helix 2	AA2	A	37	61	Right-handed alpha
Helix 3	AA3	A	62	66	Right-handed 310
Helix 4	AA4	A	94	101	Right-handed alpha
Helix 5	AA5	A	108	118	Right-handed alpha
Helix 6	AA6	A	131	138	Right-handed 310
Helix 7	AA7	A	189	193	Right-handed 310
Helix 8	AA8	A	194	205	Right-handed alpha
Helix 9	AA9	A	280	284	Right-handed 310
Helix 10	AB1	A	287	291	Right-handed 310
Helix 11	AB2	A	292	296	Right-handed 310
Helix 12	AB3	A	297	310	Right-handed alpha
Helix 13	AB4	A	345	349	Right-handed 310
Helix 14	AB5	A	371	375	Right-handed 310
Helix 15	AB6	A	398	420	Right-handed alpha
Helix 16	AB7	A	422	444	Right-handed alpha
Helix 17	AB8	A	447	453	Right-handed alpha
Helix 18	AB9	A	469	476	Right-handed alpha
Helix 19	AC1	A	490	496	Right-handed alpha
Helix 20	AC2	A	500	506	Right-handed alpha
Helix 21	AC3	A	516	525	Right-handed alpha
Helix 22	AC4	A	546	560	Right-handed alpha
Helix 23	AC5	A	561	571	Right-handed alpha
Helix 24	AC6	A	599	608	Right-handed alpha
Helix 25	AC7	A	613	617	Right-handed 310
Helix 26	AC8	A	632	645	Right-handed alpha
Helix 27	AC9	A	648	666	Right-handed alpha
Helix 28	AD1	A	672	689	Right-handed alpha
Helix 29	AD2	B	20	31	Right-handed alpha
Helix 30	AD3	B	37	61	Right-handed alpha
Helix 31	AD4	B	62	66	Right-handed 310
Helix 32	AD5	B	94	101	Right-handed alpha
Helix 33	AD6	B	108	115	Right-handed alpha
Helix 34	AD7	B	131	138	Right-handed 310
Helix 35	AD8	B	189	193	Right-handed 310
Helix 36	AD9	B	194	205	Right-handed alpha
Helix 37	AE1	B	280	284	Right-handed 310
Helix 38	AE2	B	287	291	Right-handed 310
Helix 39	AE3	B	297	310	Right-handed alpha
Helix 40	AE4	B	345	349	Right-handed 310
Helix 41	AE5	B	371	375	Right-handed 310
Helix 42	AE6	B	399	421	Right-handed alpha
Helix 43	AE7	B	422	444	Right-handed alpha
Helix 44	AE8	B	447	453	Right-handed alpha
Helix 45	AE9	B	469	476	Right-handed alpha
Helix 46	AF1	B	490	496	Right-handed alpha
Helix 47	AF2	B	497	499	Right-handed 310
Helix 48	AF3	B	500	506	Right-handed alpha
Helix 49	AF4	B	515	525	Right-handed alpha
Helix 50	AF5	B	546	571	Right-handed alpha
Helix 51	AF6	B	599	607	Right-handed alpha
Helix 52	AF7	B	632	645	Right-handed alpha
Helix 53	AF8	B	648	667	Right-handed alpha
Helix 54	AF9	B	672	689	Right-handed alpha
Helix 55	AG1	C	441	462	Right-handed alpha
Helix 56	AG2	C	470	473	Right-handed 310
Helix 57	AG3	C	513	519	Right-handed alpha
Helix 58	AG4	C	526	543	Right-handed alpha
Helix 59	AG5	C	553	564	Right-handed alpha
Helix 60	AG6	C	579	589	Right-handed alpha
Helix 61	AG7	C	598	612	Right-handed alpha
Helix 62	AG8	D	24	74	Right-handed alpha
Helix 63	AG9	D	77	112	Right-handed alpha
Helix 64	AH1	D	115	119	Right-handed alpha
Helix 65	AH2	D	142	155	Right-handed alpha
Helix 66	AH3	D	155	165	Right-handed alpha
Helix 67	AH4	D	167	178	Right-handed alpha
Helix 68	AH5	D	179	182	Right-handed 310
Helix 69	AH6	D	183	201	Right-handed alpha
Helix 70	AH7	D	202	227	Right-handed alpha
Helix 71	AH8	D	229	243	Right-handed alpha
Helix 72	AH9	D	245	274	Right-handed alpha

There are 15 sheets in PDB entry 7Z38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	B	164	168	anti-parallel
Strand 3	B	155	159	anti-parallel
Strand 4	B	140	148	anti-parallel
Strand 5	B	178	185	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	B	104	105	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	279	first strand
Strand 2	A	213	217	anti-parallel
Strand 3	A	73	78	parallel
Strand 4	A	83	88	anti-parallel
Strand 5	A	178	185	anti-parallel
Strand 6	A	140	148	anti-parallel
Strand 7	A	155	159	anti-parallel
Strand 8	A	164	168	anti-parallel
Strand 9	B	14	16	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	B	18	19	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	363	first strand
Strand 2	A	353	357	anti-parallel
Strand 3	A	378	383	parallel
Strand 4	A	329	336	anti-parallel
Strand 5	A	315	325	anti-parallel
Strand 6	D	120	122	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	363	first strand
Strand 2	A	353	357	anti-parallel
Strand 3	A	378	383	parallel
Strand 4	A	329	336	anti-parallel
Strand 5	A	315	325	anti-parallel
Strand 6	D	126	129	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	457	first strand
Strand 2	A	467	468	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	513	first strand
Strand 2	A	483	487	parallel
Strand 3	A	531	535	parallel
Strand 4	A	527	528	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	580	first strand
Strand 2	A	624	628	parallel
Strand 3	A	589	593	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	88	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	213	218	parallel
Strand 4	B	276	279	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	323	first strand
Strand 2	B	329	335	anti-parallel
Strand 3	B	378	383	anti-parallel
Strand 4	B	353	357	parallel
Strand 5	B	360	364	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	457	first strand
Strand 2	B	467	468	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	513	first strand
Strand 2	B	482	487	parallel
Strand 3	B	532	535	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	577	579	first strand
Strand 2	B	625	628	parallel
Strand 3	B	589	592	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	430	first strand
Strand 2	C	475	476	anti-parallel
Strand 3	C	482	483	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Z38

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Z38