Analysis of interatomic Contacts of Structural Units in PDB entry:
7Z79

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Z79 entry

There are 5 chains in PDB entry 7Z79 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 15	PRO 314
B	THR 9	PRO 314
C	ASP 18	PRO 314
D	ASP 18	PRO 314
E	ASP 18	ILE 130

There are 52 helices in PDB entry 7Z79. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	23	Right-handed 310
Helix 2	AA2	A	44	50	Right-handed alpha
Helix 3	AA3	A	66	81	Right-handed alpha
Helix 4	AA4	A	88	103	Right-handed alpha
Helix 5	AA5	A	146	151	Right-handed alpha
Helix 6	AA6	A	178	191	Right-handed alpha
Helix 7	AA7	A	232	245	Right-handed alpha
Helix 8	AA8	A	255	261	Right-handed alpha
Helix 9	AA9	A	289	304	Right-handed alpha
Helix 10	AB1	B	18	23	Right-handed 310
Helix 11	AB2	B	44	50	Right-handed alpha
Helix 12	AB3	B	66	81	Right-handed alpha
Helix 13	AB4	B	88	103	Right-handed alpha
Helix 14	AB5	B	146	151	Right-handed alpha
Helix 15	AB6	B	178	191	Right-handed alpha
Helix 16	AB7	B	232	245	Right-handed alpha
Helix 17	AB8	B	255	261	Right-handed alpha
Helix 18	AB9	B	289	304	Right-handed alpha
Helix 19	AC1	C	18	23	Right-handed 310
Helix 20	AC2	C	44	50	Right-handed alpha
Helix 21	AC3	C	66	81	Right-handed alpha
Helix 22	AC4	C	88	103	Right-handed alpha
Helix 23	AC5	C	147	151	Right-handed 310
Helix 24	AC6	C	178	191	Right-handed alpha
Helix 25	AC7	C	232	245	Right-handed alpha
Helix 26	AC8	C	255	261	Right-handed alpha
Helix 27	AC9	C	289	304	Right-handed alpha
Helix 28	AD1	D	18	23	Right-handed 310
Helix 29	AD2	D	44	50	Right-handed alpha
Helix 30	AD3	D	66	81	Right-handed alpha
Helix 31	AD4	D	88	103	Right-handed alpha
Helix 32	AD5	D	178	191	Right-handed alpha
Helix 33	AD6	D	232	245	Right-handed alpha
Helix 34	AD7	D	255	261	Right-handed alpha
Helix 35	AD8	D	289	304	Right-handed alpha
Helix 36	AD9	E	18	23	Right-handed 310
Helix 37	AE1	E	44	50	Right-handed alpha
Helix 38	AE2	E	66	81	Right-handed alpha
Helix 39	AE3	E	88	103	Right-handed alpha
Helix 40	AE4	E	126	128	Right-handed 310
Helix 41	AE5	E	178	191	Right-handed alpha
Helix 42	AE6	E	232	245	Right-handed alpha
Helix 43	AE7	E	255	261	Right-handed alpha
Helix 44	AE8	E	289	305	Right-handed alpha
Helix 45	AE9	F	18	23	Right-handed 310
Helix 46	AF1	F	44	50	Right-handed alpha
Helix 47	AF2	F	66	81	Right-handed alpha
Helix 48	AF3	F	88	103	Right-handed alpha
Helix 49	AF4	F	178	191	Right-handed alpha
Helix 50	AF5	F	232	245	Right-handed alpha
Helix 51	AF6	F	255	261	Right-handed alpha
Helix 52	AF7	F	289	305	Right-handed alpha

There are 27 sheets in PDB entry 7Z79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	25	28	anti-parallel
Strand 3	A	135	142	anti-parallel
Strand 4	A	109	116	anti-parallel
Strand 5	A	52	60	anti-parallel
Strand 6	A	63	64	anti-parallel
Strand 7	A	311	312	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	B	39	41	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	A	130	131	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	208	first strand
Strand 2	A	195	199	anti-parallel
Strand 3	A	154	158	parallel
Strand 4	A	273	280	parallel
Strand 5	A	264	269	anti-parallel
Strand 6	A	212	217	anti-parallel
Strand 7	A	220	223	anti-parallel
Strand 8	A	249	251	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	208	first strand
Strand 2	A	195	199	anti-parallel
Strand 3	A	154	158	parallel
Strand 4	A	273	280	parallel
Strand 5	A	283	284	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	34	first strand
Strand 2	B	25	28	anti-parallel
Strand 3	B	135	142	anti-parallel
Strand 4	B	109	116	anti-parallel
Strand 5	B	52	60	anti-parallel
Strand 6	B	63	64	anti-parallel
Strand 7	B	311	312	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	120	first strand
Strand 2	B	130	131	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	208	first strand
Strand 2	B	195	199	anti-parallel
Strand 3	B	154	158	parallel
Strand 4	B	273	280	parallel
Strand 5	B	264	269	anti-parallel
Strand 6	B	212	217	anti-parallel
Strand 7	B	220	223	anti-parallel
Strand 8	B	249	251	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	208	first strand
Strand 2	B	195	199	anti-parallel
Strand 3	B	154	158	parallel
Strand 4	B	273	280	parallel
Strand 5	B	283	284	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	25	28	anti-parallel
Strand 3	C	135	142	anti-parallel
Strand 4	C	109	116	anti-parallel
Strand 5	C	52	60	anti-parallel
Strand 6	C	63	64	anti-parallel
Strand 7	C	311	312	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	D	39	41	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	130	131	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	208	first strand
Strand 2	C	195	199	anti-parallel
Strand 3	C	154	158	parallel
Strand 4	C	273	280	parallel
Strand 5	C	264	269	anti-parallel
Strand 6	C	212	217	anti-parallel
Strand 7	C	220	223	anti-parallel
Strand 8	C	249	251	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	208	first strand
Strand 2	C	195	199	anti-parallel
Strand 3	C	154	158	parallel
Strand 4	C	273	280	parallel
Strand 5	C	283	284	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	34	first strand
Strand 2	D	25	28	anti-parallel
Strand 3	D	135	142	anti-parallel
Strand 4	D	109	116	anti-parallel
Strand 5	D	52	60	anti-parallel
Strand 6	D	63	64	anti-parallel
Strand 7	D	311	312	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	120	first strand
Strand 2	D	130	131	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	208	first strand
Strand 2	D	195	199	anti-parallel
Strand 3	D	154	158	parallel
Strand 4	D	273	280	parallel
Strand 5	D	264	269	anti-parallel
Strand 6	D	212	217	anti-parallel
Strand 7	D	220	223	anti-parallel
Strand 8	D	249	251	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	208	first strand
Strand 2	D	195	199	anti-parallel
Strand 3	D	154	158	parallel
Strand 4	D	273	280	parallel
Strand 5	D	283	284	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	34	first strand
Strand 2	E	25	28	anti-parallel
Strand 3	E	135	142	anti-parallel
Strand 4	E	109	116	anti-parallel
Strand 5	E	52	60	anti-parallel
Strand 6	E	63	64	anti-parallel
Strand 7	E	311	312	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	41	first strand
Strand 2	F	39	41	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	120	first strand
Strand 2	E	130	131	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	208	first strand
Strand 2	E	195	199	anti-parallel
Strand 3	E	154	158	parallel
Strand 4	E	273	280	parallel
Strand 5	E	264	269	anti-parallel
Strand 6	E	212	217	anti-parallel
Strand 7	E	220	223	anti-parallel
Strand 8	E	249	251	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	208	first strand
Strand 2	E	195	199	anti-parallel
Strand 3	E	154	158	parallel
Strand 4	E	273	280	parallel
Strand 5	E	283	284	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	34	first strand
Strand 2	F	25	28	anti-parallel
Strand 3	F	135	142	anti-parallel
Strand 4	F	109	116	anti-parallel
Strand 5	F	52	60	anti-parallel
Strand 6	F	63	64	anti-parallel
Strand 7	F	311	312	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	120	first strand
Strand 2	F	130	131	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	205	208	first strand
Strand 2	F	195	199	anti-parallel
Strand 3	F	154	158	parallel
Strand 4	F	273	280	parallel
Strand 5	F	264	269	anti-parallel
Strand 6	F	212	217	anti-parallel
Strand 7	F	220	223	anti-parallel
Strand 8	F	249	251	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	205	208	first strand
Strand 2	F	195	199	anti-parallel
Strand 3	F	154	158	parallel
Strand 4	F	273	280	parallel
Strand 5	F	283	284	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Z79

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Z79