Analysis of interatomic Contacts of Structural Units in PDB entry:
7Z8J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Z8J entry

There are 9 chains in PDB entry 7Z8J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
X	PRO 100	ARG 192
f	ALA 267	GLU 1048
h	LYS 264	ILE 621
j	ARG 103	LYS 439
m	VAL 259	LEU 851
n	GLN 465	LYS 681
o	LYS 264	ILE 621
r	GLU 426	LYS 439
x	PRO 100	ARG 192

There are 83 helices in PDB entry 7Z8J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	X	100	192	Right-handed alpha
Helix 2	AA2	f	270	283	Right-handed alpha
Helix 3	AA3	f	332	337	Right-handed alpha
Helix 4	AA4	f	340	347	Right-handed alpha
Helix 5	AA5	f	349	365	Right-handed alpha
Helix 6	AA6	f	366	370	Right-handed 310
Helix 7	AA7	f	373	400	Right-handed alpha
Helix 8	AA8	f	405	441	Right-handed alpha
Helix 9	AA9	f	454	484	Right-handed alpha
Helix 10	AB1	f	514	532	Right-handed alpha
Helix 11	AB2	f	539	575	Right-handed alpha
Helix 12	AB3	f	577	588	Right-handed alpha
Helix 13	AB4	f	589	593	Right-handed 310
Helix 14	AB5	f	597	625	Right-handed alpha
Helix 15	AB6	f	630	639	Right-handed alpha
Helix 16	AB7	f	642	670	Right-handed alpha
Helix 17	AB8	f	672	675	Right-handed 310
Helix 18	AB9	f	676	693	Right-handed alpha
Helix 19	AC1	f	695	710	Right-handed alpha
Helix 20	AC2	f	740	757	Right-handed alpha
Helix 21	AC3	f	761	774	Right-handed alpha
Helix 22	AC4	f	774	798	Right-handed alpha
Helix 23	AC5	f	799	804	Right-handed 310
Helix 24	AC6	f	805	820	Right-handed alpha
Helix 25	AC7	f	828	864	Right-handed alpha
Helix 26	AC8	f	865	867	Right-handed 310
Helix 27	AC9	f	870	892	Right-handed alpha
Helix 28	AD1	f	895	927	Right-handed alpha
Helix 29	AD2	f	974	995	Right-handed alpha
Helix 30	AD3	f	1013	1018	Right-handed alpha
Helix 31	AD4	f	1019	1026	Right-handed 310
Helix 32	AD5	f	1030	1048	Right-handed alpha
Helix 33	AD6	h	600	605	Right-handed alpha
Helix 34	AD7	h	609	621	Right-handed alpha
Helix 35	AD8	j	112	122	Right-handed 310
Helix 36	AD9	j	141	143	Right-handed 310
Helix 37	AE1	j	144	164	Right-handed alpha
Helix 38	AE2	j	166	183	Right-handed alpha
Helix 39	AE3	j	233	235	Right-handed 310
Helix 40	AE4	j	236	244	Right-handed alpha
Helix 41	AE5	j	247	266	Right-handed alpha
Helix 42	AE6	j	279	293	Right-handed alpha
Helix 43	AE7	j	316	327	Right-handed alpha
Helix 44	AE8	j	335	340	Right-handed alpha
Helix 45	AE9	j	358	373	Right-handed alpha
Helix 46	AF1	j	427	439	Right-handed alpha
Helix 47	AF2	m	270	292	Right-handed alpha
Helix 48	AF3	m	323	338	Right-handed alpha
Helix 49	AF4	m	341	346	Right-handed alpha
Helix 50	AF5	m	349	365	Right-handed alpha
Helix 51	AF6	m	366	370	Right-handed 310
Helix 52	AF7	m	373	399	Right-handed alpha
Helix 53	AF8	m	405	441	Right-handed alpha
Helix 54	AF9	m	442	445	Right-handed 310
Helix 55	AG1	m	456	483	Right-handed alpha
Helix 56	AG2	m	514	533	Right-handed alpha
Helix 57	AG3	m	539	575	Right-handed alpha
Helix 58	AG4	m	577	588	Right-handed alpha
Helix 59	AG5	m	589	593	Right-handed 310
Helix 60	AG6	m	594	601	Right-handed alpha
Helix 61	AG7	m	602	625	Right-handed alpha
Helix 62	AG8	m	630	639	Right-handed alpha
Helix 63	AG9	m	642	670	Right-handed alpha
Helix 64	AH1	m	672	676	Right-handed 310
Helix 65	AH2	m	678	693	Right-handed alpha
Helix 66	AH3	m	695	710	Right-handed alpha
Helix 67	AH4	m	741	757	Right-handed alpha
Helix 68	AH5	m	761	798	Right-handed alpha
Helix 69	AH6	m	799	804	Right-handed 310
Helix 70	AH7	m	805	821	Right-handed alpha
Helix 71	AH8	m	828	851	Right-handed alpha
Helix 72	AH9	n	466	481	Right-handed alpha
Helix 73	AI1	n	518	531	Right-handed alpha
Helix 74	AI2	n	547	575	Right-handed alpha
Helix 75	AI3	n	577	588	Right-handed alpha
Helix 76	AI4	n	596	616	Right-handed alpha
Helix 77	AI5	n	662	667	Right-handed alpha
Helix 78	AI6	n	672	675	Right-handed 310
Helix 79	AI7	n	676	681	Right-handed alpha
Helix 80	AI8	o	600	605	Right-handed alpha
Helix 81	AI9	o	609	621	Right-handed alpha
Helix 82	AJ1	r	427	439	Right-handed alpha
Helix 83	AJ2	x	101	192	Right-handed alpha

There are 17 sheets in PDB entry 7Z8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	718	724	first strand
Strand 2	f	731	737	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	265	271	first strand
Strand 2	h	594	599	anti-parallel
Strand 3	h	584	589	anti-parallel
Strand 4	h	573	578	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	282	287	first strand
Strand 2	h	294	299	anti-parallel
Strand 3	h	311	317	anti-parallel
Strand 4	h	327	331	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	335	340	first strand
Strand 2	h	347	352	anti-parallel
Strand 3	h	357	361	anti-parallel
Strand 4	h	371	372	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	386	392	first strand
Strand 2	h	395	401	anti-parallel
Strand 3	h	406	410	anti-parallel
Strand 4	h	420	423	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	434	438	first strand
Strand 2	h	446	451	anti-parallel
Strand 3	h	456	460	anti-parallel
Strand 4	h	467	472	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	479	484	first strand
Strand 2	h	496	501	anti-parallel
Strand 3	h	506	510	anti-parallel
Strand 4	h	519	520	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	527	532	first strand
Strand 2	h	539	544	anti-parallel
Strand 3	h	548	553	anti-parallel
Strand 4	h	563	566	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	133	138	first strand
Strand 2	j	227	232	parallel
Strand 3	j	268	271	parallel
Strand 4	j	309	310	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	718	719	first strand
Strand 2	m	736	737	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	265	271	first strand
Strand 2	o	594	599	anti-parallel
Strand 3	o	584	589	anti-parallel
Strand 4	o	573	578	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	282	287	first strand
Strand 2	o	294	299	anti-parallel
Strand 3	o	311	317	anti-parallel
Strand 4	o	327	331	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	338	340	first strand
Strand 2	o	347	350	anti-parallel
Strand 3	o	358	361	anti-parallel
Strand 4	o	371	372	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	384	392	first strand
Strand 2	o	395	402	anti-parallel
Strand 3	o	406	410	anti-parallel
Strand 4	o	420	423	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	434	438	first strand
Strand 2	o	446	451	anti-parallel
Strand 3	o	456	460	anti-parallel
Strand 4	o	467	472	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	479	484	first strand
Strand 2	o	496	501	anti-parallel
Strand 3	o	505	510	anti-parallel
Strand 4	o	518	520	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	527	532	first strand
Strand 2	o	539	544	anti-parallel
Strand 3	o	548	553	anti-parallel
Strand 4	o	563	566	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Z8J

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Z8J