Analysis of interatomic Contacts of Structural Units in PDB entry:
7Z8K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Z8K entry

There are 9 chains in PDB entry 7Z8K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
e	HIS 210	TYR 1120
i	ARG 103	GLN 373
f	HIS 210	LYS 767
h	LYS 264	ILE 621
X	GLN 179	GLN 315
x	GLN 179	GLU 313
F	ILE 7	PHE 376
W	VAL 105	GLU 269
w	VAL 105	GLU 269

There are 98 helices in PDB entry 7Z8K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	e	210	223	Right-handed alpha
Helix 2	AA2	e	228	237	Right-handed 310
Helix 3	AA3	e	238	261	Right-handed alpha
Helix 4	AA4	e	270	293	Right-handed alpha
Helix 5	AA5	e	294	307	Right-handed alpha
Helix 6	AA6	e	309	319	Right-handed alpha
Helix 7	AA7	e	321	338	Right-handed alpha
Helix 8	AA8	e	340	347	Right-handed alpha
Helix 9	AA9	e	349	366	Right-handed alpha
Helix 10	AB1	e	367	370	Right-handed 310
Helix 11	AB2	e	373	400	Right-handed alpha
Helix 12	AB3	e	405	441	Right-handed alpha
Helix 13	AB4	e	455	484	Right-handed alpha
Helix 14	AB5	e	513	532	Right-handed alpha
Helix 15	AB6	e	539	575	Right-handed alpha
Helix 16	AB7	e	577	588	Right-handed alpha
Helix 17	AB8	e	589	593	Right-handed 310
Helix 18	AB9	e	596	625	Right-handed alpha
Helix 19	AC1	e	630	639	Right-handed alpha
Helix 20	AC2	e	642	670	Right-handed alpha
Helix 21	AC3	e	672	675	Right-handed 310
Helix 22	AC4	e	676	693	Right-handed alpha
Helix 23	AC5	e	695	710	Right-handed alpha
Helix 24	AC6	e	741	757	Right-handed alpha
Helix 25	AC7	e	761	798	Right-handed alpha
Helix 26	AC8	e	799	803	Right-handed 310
Helix 27	AC9	e	805	820	Right-handed alpha
Helix 28	AD1	e	828	867	Right-handed alpha
Helix 29	AD2	e	870	891	Right-handed alpha
Helix 30	AD3	e	895	927	Right-handed alpha
Helix 31	AD4	e	932	936	Right-handed 310
Helix 32	AD5	e	974	995	Right-handed alpha
Helix 33	AD6	e	1013	1018	Right-handed alpha
Helix 34	AD7	e	1021	1025	Right-handed 310
Helix 35	AD8	e	1030	1057	Right-handed alpha
Helix 36	AD9	e	1058	1061	Right-handed 310
Helix 37	AE1	e	1109	1120	Right-handed alpha
Helix 38	AE2	i	112	117	Right-handed 310
Helix 39	AE3	i	118	123	Right-handed alpha
Helix 40	AE4	i	141	143	Right-handed 310
Helix 41	AE5	i	144	164	Right-handed alpha
Helix 42	AE6	i	166	183	Right-handed alpha
Helix 43	AE7	i	233	235	Right-handed 310
Helix 44	AE8	i	236	244	Right-handed alpha
Helix 45	AE9	i	247	266	Right-handed alpha
Helix 46	AF1	i	279	293	Right-handed alpha
Helix 47	AF2	i	316	327	Right-handed alpha
Helix 48	AF3	i	335	340	Right-handed alpha
Helix 49	AF4	i	358	373	Right-handed alpha
Helix 50	AF5	f	211	223	Right-handed alpha
Helix 51	AF6	f	228	237	Right-handed 310
Helix 52	AF7	f	238	261	Right-handed alpha
Helix 53	AF8	f	270	293	Right-handed alpha
Helix 54	AF9	f	294	307	Right-handed alpha
Helix 55	AG1	f	309	319	Right-handed alpha
Helix 56	AG2	f	321	337	Right-handed alpha
Helix 57	AG3	f	340	347	Right-handed alpha
Helix 58	AG4	f	349	366	Right-handed alpha
Helix 59	AG5	f	367	370	Right-handed 310
Helix 60	AG6	f	373	400	Right-handed alpha
Helix 61	AG7	f	405	441	Right-handed alpha
Helix 62	AG8	f	455	484	Right-handed alpha
Helix 63	AG9	f	513	533	Right-handed alpha
Helix 64	AH1	f	539	575	Right-handed alpha
Helix 65	AH2	f	577	588	Right-handed alpha
Helix 66	AH3	f	589	593	Right-handed 310
Helix 67	AH4	f	596	625	Right-handed alpha
Helix 68	AH5	f	630	639	Right-handed alpha
Helix 69	AH6	f	642	670	Right-handed alpha
Helix 70	AH7	f	672	675	Right-handed 310
Helix 71	AH8	f	676	693	Right-handed alpha
Helix 72	AH9	f	695	709	Right-handed alpha
Helix 73	AI1	f	745	756	Right-handed alpha
Helix 74	AI2	f	761	767	Right-handed alpha
Helix 75	AI3	h	600	605	Right-handed alpha
Helix 76	AI4	h	609	621	Right-handed alpha
Helix 77	AI5	X	180	315	Right-handed alpha
Helix 78	AI6	x	180	313	Right-handed alpha
Helix 79	AI7	F	59	65	Right-handed alpha
Helix 80	AI8	F	82	94	Right-handed alpha
Helix 81	AI9	F	117	131	Right-handed alpha
Helix 82	AJ1	F	142	151	Right-handed alpha
Helix 83	AJ2	F	177	180	Right-handed 310
Helix 84	AJ3	F	186	201	Right-handed alpha
Helix 85	AJ4	F	207	221	Right-handed alpha
Helix 86	AJ5	F	227	234	Right-handed alpha
Helix 87	AJ6	F	253	258	Right-handed alpha
Helix 88	AJ7	F	259	264	Right-handed alpha
Helix 89	AJ8	F	274	286	Right-handed alpha
Helix 90	AJ9	F	290	297	Right-handed alpha
Helix 91	AK1	F	302	307	Right-handed 310
Helix 92	AK2	F	309	322	Right-handed alpha
Helix 93	AK3	F	338	350	Right-handed alpha
Helix 94	AK4	F	352	357	Right-handed alpha
Helix 95	AK5	F	360	367	Right-handed alpha
Helix 96	AK6	F	367	374	Right-handed alpha
Helix 97	AK7	W	106	269	Right-handed alpha
Helix 98	AK8	w	106	269	Right-handed alpha

There are 16 sheets in PDB entry 7Z8K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	721	723	first strand
Strand 2	e	732	734	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	969	971	first strand
Strand 2	e	958	964	anti-parallel
Strand 3	e	1105	1108	parallel
Strand 4	e	1099	1102	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	133	138	first strand
Strand 2	i	227	232	parallel
Strand 3	i	268	271	parallel
Strand 4	i	309	310	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	265	271	first strand
Strand 2	h	594	599	anti-parallel
Strand 3	h	584	589	anti-parallel
Strand 4	h	573	578	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	282	287	first strand
Strand 2	h	294	299	anti-parallel
Strand 3	h	311	317	anti-parallel
Strand 4	h	327	331	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	335	340	first strand
Strand 2	h	347	352	anti-parallel
Strand 3	h	357	361	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	384	391	first strand
Strand 2	h	396	402	anti-parallel
Strand 3	h	406	410	anti-parallel
Strand 4	h	420	423	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	434	438	first strand
Strand 2	h	446	451	anti-parallel
Strand 3	h	456	460	anti-parallel
Strand 4	h	467	468	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	479	484	first strand
Strand 2	h	496	501	anti-parallel
Strand 3	h	506	510	anti-parallel
Strand 4	h	518	520	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	527	532	first strand
Strand 2	h	539	544	anti-parallel
Strand 3	h	548	553	anti-parallel
Strand 4	h	563	566	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	36	first strand
Strand 2	F	20	25	anti-parallel
Strand 3	F	12	16	anti-parallel
Strand 4	F	108	112	parallel
Strand 5	F	136	141	parallel
Strand 6	F	358	359	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	58	first strand
Strand 2	F	39	42	anti-parallel
Strand 3	F	69	72	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	76	first strand
Strand 2	F	79	80	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	175	first strand
Strand 2	F	165	171	anti-parallel
Strand 3	F	181	183	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	175	first strand
Strand 2	F	165	171	anti-parallel
Strand 3	F	154	160	anti-parallel
Strand 4	F	298	301	parallel
Strand 5	F	330	331	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	240	242	first strand
Strand 2	F	248	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Z8K

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Z8K