Analysis of interatomic Contacts of Structural Units in PDB entry:
7Z8M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Z8M entry

There are 9 chains in PDB entry 7Z8M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	ASP 3	PRO 26
X	SER 344	GLU 358
U	GLN 6	GLY 183
Y	ALA 2	PRO 464
J	GLU 12	LEU 390
G	ALA 8	PHE 376
H	ASP 4	PHE 375
V	MET 1	VAL 182
I	ILE 7	PHE 376

There are 93 helices in PDB entry 7Z8M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	3	7	Right-handed 310
Helix 2	AA2	X	346	358	Right-handed alpha
Helix 3	AA3	U	160	175	Right-handed alpha
Helix 4	AA4	Y	6	8	Right-handed 310
Helix 5	AA5	Y	23	27	Right-handed 310
Helix 6	AA6	Y	59	66	Right-handed alpha
Helix 7	AA7	Y	117	122	Right-handed alpha
Helix 8	AA8	Y	140	171	Right-handed alpha
Helix 9	AA9	Y	236	240	Right-handed 310
Helix 10	AB1	Y	251	257	Right-handed alpha
Helix 11	AB2	Y	258	262	Right-handed 310
Helix 12	AB3	Y	265	269	Right-handed 310
Helix 13	AB4	Y	308	312	Right-handed 310
Helix 14	AB5	Y	447	452	Right-handed alpha
Helix 15	AB6	J	60	79	Right-handed alpha
Helix 16	AB7	J	98	112	Right-handed alpha
Helix 17	AB8	J	123	132	Right-handed alpha
Helix 18	AB9	J	158	161	Right-handed 310
Helix 19	AC1	J	167	182	Right-handed alpha
Helix 20	AC2	J	203	214	Right-handed alpha
Helix 21	AC3	J	219	232	Right-handed alpha
Helix 22	AC4	J	259	266	Right-handed alpha
Helix 23	AC5	J	267	272	Right-handed alpha
Helix 24	AC6	J	279	290	Right-handed alpha
Helix 25	AC7	J	295	302	Right-handed alpha
Helix 26	AC8	J	307	312	Right-handed 310
Helix 27	AC9	J	314	328	Right-handed alpha
Helix 28	AD1	J	329	337	Right-handed alpha
Helix 29	AD2	J	352	363	Right-handed alpha
Helix 30	AD3	J	364	372	Right-handed alpha
Helix 31	AD4	J	375	382	Right-handed alpha
Helix 32	AD5	G	59	65	Right-handed alpha
Helix 33	AD6	G	82	94	Right-handed alpha
Helix 34	AD7	G	117	131	Right-handed alpha
Helix 35	AD8	G	141	151	Right-handed alpha
Helix 36	AD9	G	177	180	Right-handed 310
Helix 37	AE1	G	186	202	Right-handed alpha
Helix 38	AE2	G	207	221	Right-handed alpha
Helix 39	AE3	G	227	234	Right-handed alpha
Helix 40	AE4	G	253	258	Right-handed alpha
Helix 41	AE5	G	259	263	Right-handed 310
Helix 42	AE6	G	264	269	Right-handed 310
Helix 43	AE7	G	274	286	Right-handed alpha
Helix 44	AE8	G	287	296	Right-handed alpha
Helix 45	AE9	G	302	307	Right-handed 310
Helix 46	AF1	G	309	322	Right-handed alpha
Helix 47	AF2	G	338	349	Right-handed alpha
Helix 48	AF3	G	350	357	Right-handed 310
Helix 49	AF4	G	360	366	Right-handed alpha
Helix 50	AF5	G	367	375	Right-handed alpha
Helix 51	AF6	H	55	61	Right-handed alpha
Helix 52	AF7	H	78	92	Right-handed alpha
Helix 53	AF8	H	97	101	Right-handed 310
Helix 54	AF9	H	112	126	Right-handed alpha
Helix 55	AG1	H	137	145	Right-handed alpha
Helix 56	AG2	H	172	175	Right-handed 310
Helix 57	AG3	H	182	197	Right-handed alpha
Helix 58	AG4	H	202	217	Right-handed alpha
Helix 59	AG5	H	222	233	Right-handed alpha
Helix 60	AG6	H	251	255	Right-handed 310
Helix 61	AG7	H	258	263	Right-handed alpha
Helix 62	AG8	H	264	268	Right-handed 310
Helix 63	AG9	H	273	285	Right-handed alpha
Helix 64	AH1	H	286	296	Right-handed alpha
Helix 65	AH2	H	301	306	Right-handed 310
Helix 66	AH3	H	308	321	Right-handed alpha
Helix 67	AH4	H	334	336	Right-handed 310
Helix 68	AH5	H	337	349	Right-handed alpha
Helix 69	AH6	H	350	355	Right-handed 310
Helix 70	AH7	H	359	366	Right-handed alpha
Helix 71	AH8	H	369	374	Right-handed alpha
Helix 72	AH9	V	9	11	Right-handed 310
Helix 73	AI1	V	160	175	Right-handed alpha
Helix 74	AI2	I	59	65	Right-handed alpha
Helix 75	AI3	I	82	94	Right-handed alpha
Helix 76	AI4	I	117	131	Right-handed alpha
Helix 77	AI5	I	142	151	Right-handed alpha
Helix 78	AI6	I	177	180	Right-handed 310
Helix 79	AI7	I	186	202	Right-handed alpha
Helix 80	AI8	I	207	221	Right-handed alpha
Helix 81	AI9	I	227	234	Right-handed alpha
Helix 82	AJ1	I	253	258	Right-handed alpha
Helix 83	AJ2	I	259	264	Right-handed alpha
Helix 84	AJ3	I	265	269	Right-handed 310
Helix 85	AJ4	I	274	286	Right-handed alpha
Helix 86	AJ5	I	287	297	Right-handed alpha
Helix 87	AJ6	I	302	307	Right-handed 310
Helix 88	AJ7	I	309	322	Right-handed alpha
Helix 89	AJ8	I	335	337	Right-handed 310
Helix 90	AJ9	I	338	350	Right-handed alpha
Helix 91	AK1	I	351	356	Right-handed 310
Helix 92	AK2	I	360	367	Right-handed alpha
Helix 93	AK3	I	368	374	Right-handed alpha

There are 35 sheets in PDB entry 7Z8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	19	21	first strand
Strand 2	I	329	331	anti-parallel
Strand 3	I	298	301	parallel
Strand 4	I	155	160	parallel
Strand 5	I	165	171	anti-parallel
Strand 6	I	174	175	anti-parallel
Strand 7	G	45	46	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	19	21	first strand
Strand 2	I	329	331	anti-parallel
Strand 3	I	298	301	parallel
Strand 4	I	155	160	parallel
Strand 5	I	165	171	anti-parallel
Strand 6	I	181	183	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	23	24	first strand
Strand 2	U	40	42	parallel
Strand 3	U	61	63	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	27	29	first strand
Strand 2	U	48	50	parallel
Strand 3	U	82	84	parallel
Strand 4	U	100	101	parallel
Strand 5	U	118	119	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	55	56	first strand
Strand 2	U	89	90	parallel
Strand 3	U	106	107	parallel
Strand 4	U	124	125	parallel
Strand 5	U	141	143	parallel
Strand 6	U	151	153	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	112	113	first strand
Strand 2	U	130	131	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	20	22	first strand
Strand 2	Y	10	14	anti-parallel
Strand 3	Y	453	461	anti-parallel
Strand 4	Y	423	431	anti-parallel
Strand 5	Y	340	344	anti-parallel
Strand 6	Y	370	373	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	57	58	first strand
Strand 2	Y	43	50	anti-parallel
Strand 3	Y	277	283	anti-parallel
Strand 4	Y	290	294	anti-parallel
Strand 5	Y	303	306	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	108	110	first strand
Strand 2	Y	82	86	anti-parallel
Strand 3	Y	69	75	anti-parallel
Strand 4	Y	272	275	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	315	318	first strand
Strand 2	Y	330	335	anti-parallel
Strand 3	Y	408	411	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	37	40	first strand
Strand 2	J	24	29	anti-parallel
Strand 3	J	16	19	anti-parallel
Strand 4	J	89	93	parallel
Strand 5	J	117	122	parallel
Strand 6	J	373	374	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	42	43	first strand
Strand 2	J	52	53	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	155	156	first strand
Strand 2	J	146	152	anti-parallel
Strand 3	J	162	164	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	155	156	first strand
Strand 2	J	146	152	anti-parallel
Strand 3	J	135	141	anti-parallel
Strand 4	J	303	306	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	185	186	first strand
Strand 2	J	254	258	anti-parallel
Strand 3	J	246	250	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	36	first strand
Strand 2	G	20	25	anti-parallel
Strand 3	G	12	15	anti-parallel
Strand 4	G	108	111	parallel
Strand 5	G	136	140	parallel
Strand 6	G	358	359	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	42	first strand
Strand 2	G	69	72	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	79	80	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	174	175	first strand
Strand 2	G	165	171	anti-parallel
Strand 3	G	181	183	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	174	175	first strand
Strand 2	G	165	171	anti-parallel
Strand 3	G	155	160	anti-parallel
Strand 4	G	298	301	parallel
Strand 5	G	330	331	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	240	242	first strand
Strand 2	G	248	250	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	32	first strand
Strand 2	H	16	21	anti-parallel
Strand 3	H	8	12	anti-parallel
Strand 4	H	103	107	parallel
Strand 5	H	131	136	parallel
Strand 6	H	357	358	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	54	first strand
Strand 2	H	35	38	anti-parallel
Strand 3	H	65	68	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	72	first strand
Strand 2	H	75	76	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	169	170	first strand
Strand 2	H	160	166	anti-parallel
Strand 3	H	176	178	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	169	170	first strand
Strand 2	H	160	166	anti-parallel
Strand 3	H	150	155	anti-parallel
Strand 4	H	297	300	parallel
Strand 5	H	329	330	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	238	241	first strand
Strand 2	H	247	250	anti-parallel

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There are 9 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	13	15	first strand
Strand 2	V	21	23	anti-parallel
Strand 3	V	41	42	parallel
Strand 4	V	62	63	parallel
Strand 5	V	92	93	parallel
Strand 6	V	109	110	parallel
Strand 7	V	127	128	parallel
Strand 8	V	145	147	parallel
Strand 9	V	152	153	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	27	29	first strand
Strand 2	V	47	49	parallel
Strand 3	V	68	69	parallel
Strand 4	V	98	104	parallel
Strand 5	V	114	122	parallel
Strand 6	V	132	134	parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	35	36	first strand
Strand 2	V	55	57	parallel
Strand 3	V	85	87	parallel
Strand 4	V	98	104	parallel
Strand 5	V	114	122	parallel
Strand 6	V	139	140	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	73	74	first strand
Strand 2	V	81	82	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	33	36	first strand
Strand 2	I	20	25	anti-parallel
Strand 3	I	12	15	anti-parallel
Strand 4	I	108	112	parallel
Strand 5	I	136	141	parallel
Strand 6	I	358	359	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	39	42	first strand
Strand 2	I	69	72	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	75	76	first strand
Strand 2	I	79	80	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	240	242	first strand
Strand 2	I	248	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Z8M

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Z8M