Analysis of interatomic Contacts of Structural Units in PDB entry:
7Z99


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Z99 entry

There is 1 chain in PDB entry 7Z99 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ALA 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7Z99. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
34 41Right-handed alpha
Helix 3
AA3
A
50 60Right-handed alpha
Helix 4
AA4
A
104 119Right-handed alpha
Helix 5
AA5
A
129 140Right-handed alpha
Helix 6
AA6
A
150 156Right-handed 310
Helix 7
AA7
A
159 163Right-handed 310
Helix 8
AA8
A
233 249Right-handed alpha
Helix 9
AA9
A
249 254Right-handed alpha
Helix 10
AB1
A
293 295Right-handed 310
Helix 11
AB2
A
300 304Right-handed 310
Helix 12
AB3
A
305 325Right-handed alpha
Helix 13
AB4
A
330 345Right-handed alpha
Helix 14
AB5
A
345 358Right-handed alpha
Helix 15
AB6
A
361 372Right-handed alpha
Helix 16
AB7
A
374 385Right-handed alpha
Helix 17
AB8
A
386 392Right-handed 310
Helix 18
AB9
A
397 411Right-handed alpha
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There are 4 sheets in PDB entry 7Z99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 125first strand
Strand 2
A
26 31parallel
Strand 3
A
3 7parallel
Strand 4
A
142 145parallel
Strand 5
A
288 291parallel
Strand 6
A
280 282anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
88 102anti-parallel
Strand 3
A
71 80anti-parallel
Strand 4
A
189 194parallel
Strand 5
A
198 207anti-parallel
Strand 6
A
210 219anti-parallel
Strand 7
A
171 178anti-parallel
Strand 8
A
260 261anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
88 102anti-parallel
Strand 3
A
71 80anti-parallel
Strand 4
A
189 194parallel
Strand 5
A
198 207anti-parallel
Strand 6
A
210 219anti-parallel
Strand 7
A
171 178anti-parallel
Strand 8
A
267 270anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
297 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il