Analysis of interatomic Contacts of Structural Units in PDB entry:
7Z9M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Z9M entry

There are 10 chains in PDB entry 7Z9M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 8	ARG 121
A	THR 123	ASN 524
B	GLY 405	ASN 806
C	ILE 8	ARG 121
C	THR 123	ASN 524
D	GLY 405	ASN 806
E	A 1	T 14
F	A 1	A 14
G	A 15	T 32
H	G 15	T 32

There are 76 helices in PDB entry 7Z9M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	32	Right-handed alpha
Helix 2	AA2	A	42	55	Right-handed alpha
Helix 3	AA3	A	66	77	Right-handed alpha
Helix 4	AA4	A	81	92	Right-handed alpha
Helix 5	AA5	A	119	122	Right-handed 310
Helix 6	AA6	A	130	135	Right-handed alpha
Helix 7	AA7	A	164	170	Right-handed alpha
Helix 8	AA8	A	186	200	Right-handed alpha
Helix 9	AA9	A	204	212	Right-handed alpha
Helix 10	AB1	A	226	236	Right-handed alpha
Helix 11	AB2	A	269	283	Right-handed alpha
Helix 12	AB3	A	312	324	Right-handed alpha
Helix 13	AB4	A	346	388	Right-handed alpha
Helix 14	AB5	A	389	400	Right-handed alpha
Helix 15	AB6	A	402	413	Right-handed alpha
Helix 16	AB7	A	420	427	Right-handed alpha
Helix 17	AB8	A	451	460	Right-handed alpha
Helix 18	AB9	A	462	466	Right-handed 310
Helix 19	AC1	A	467	494	Right-handed alpha
Helix 20	AC2	A	496	514	Right-handed alpha
Helix 21	AC3	B	425	436	Right-handed alpha
Helix 22	AC4	B	457	464	Right-handed alpha
Helix 23	AC5	B	465	475	Right-handed alpha
Helix 24	AC6	B	500	518	Right-handed alpha
Helix 25	AC7	B	518	525	Right-handed alpha
Helix 26	AC8	B	547	561	Right-handed alpha
Helix 27	AC9	B	577	597	Right-handed alpha
Helix 28	AD1	B	598	601	Right-handed 310
Helix 29	AD2	B	602	610	Right-handed alpha
Helix 30	AD3	B	625	639	Right-handed alpha
Helix 31	AD4	B	678	684	Right-handed alpha
Helix 32	AD5	B	684	697	Right-handed alpha
Helix 33	AD6	B	718	731	Right-handed alpha
Helix 34	AD7	B	732	734	Right-handed 310
Helix 35	AD8	B	741	745	Right-handed 310
Helix 36	AD9	B	746	754	Right-handed alpha
Helix 37	AE1	B	769	782	Right-handed alpha
Helix 38	AE2	B	784	795	Right-handed alpha
Helix 39	AE3	B	796	801	Right-handed alpha
Helix 40	AE4	C	13	32	Right-handed alpha
Helix 41	AE5	C	42	55	Right-handed alpha
Helix 42	AE6	C	66	77	Right-handed alpha
Helix 43	AE7	C	82	92	Right-handed alpha
Helix 44	AE8	C	119	122	Right-handed 310
Helix 45	AE9	C	130	135	Right-handed alpha
Helix 46	AF1	C	164	170	Right-handed alpha
Helix 47	AF2	C	186	200	Right-handed alpha
Helix 48	AF3	C	204	212	Right-handed alpha
Helix 49	AF4	C	226	236	Right-handed alpha
Helix 50	AF5	C	269	283	Right-handed alpha
Helix 51	AF6	C	312	324	Right-handed alpha
Helix 52	AF7	C	346	389	Right-handed alpha
Helix 53	AF8	C	389	399	Right-handed alpha
Helix 54	AF9	C	402	412	Right-handed alpha
Helix 55	AG1	C	420	427	Right-handed alpha
Helix 56	AG2	C	451	460	Right-handed alpha
Helix 57	AG3	C	462	466	Right-handed 310
Helix 58	AG4	C	467	493	Right-handed alpha
Helix 59	AG5	C	495	514	Right-handed alpha
Helix 60	AG6	D	425	435	Right-handed alpha
Helix 61	AG7	D	457	464	Right-handed alpha
Helix 62	AG8	D	465	475	Right-handed alpha
Helix 63	AG9	D	500	518	Right-handed alpha
Helix 64	AH1	D	518	525	Right-handed alpha
Helix 65	AH2	D	549	561	Right-handed alpha
Helix 66	AH3	D	577	596	Right-handed alpha
Helix 67	AH4	D	602	610	Right-handed alpha
Helix 68	AH5	D	616	621	Right-handed alpha
Helix 69	AH6	D	624	640	Right-handed alpha
Helix 70	AH7	D	678	684	Right-handed alpha
Helix 71	AH8	D	684	697	Right-handed alpha
Helix 72	AH9	D	718	731	Right-handed alpha
Helix 73	AI1	D	741	745	Right-handed 310
Helix 74	AI2	D	746	754	Right-handed alpha
Helix 75	AI3	D	769	782	Right-handed alpha
Helix 76	AI4	D	784	795	Right-handed alpha

There are 23 sheets in PDB entry 7Z9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	B	762	766	parallel
Strand 3	B	527	530	anti-parallel
Strand 4	B	492	494	parallel
Strand 5	B	419	421	parallel
Strand 6	B	442	443	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	124	127	anti-parallel
Strand 3	A	103	106	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	154	156	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	174	first strand
Strand 2	A	179	182	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	333	first strand
Strand 2	A	237	243	anti-parallel
Strand 3	A	222	224	anti-parallel
Strand 4	A	520	522	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	250	first strand
Strand 2	A	257	263	anti-parallel
Strand 3	A	303	307	anti-parallel
Strand 4	A	289	294	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	342	344	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	416	first strand
Strand 2	A	447	449	anti-parallel
Strand 3	A	442	443	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	546	first strand
Strand 2	B	535	539	anti-parallel
Strand 3	B	735	738	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	568	first strand
Strand 2	B	706	709	anti-parallel
Strand 3	B	712	713	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	663	665	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	653	first strand
Strand 2	B	658	660	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	D	762	766	parallel
Strand 3	D	527	530	anti-parallel
Strand 4	D	492	494	parallel
Strand 5	D	419	421	parallel
Strand 6	D	442	443	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	124	127	anti-parallel
Strand 3	C	103	106	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	154	156	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	174	first strand
Strand 2	C	179	182	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	333	first strand
Strand 2	C	237	243	anti-parallel
Strand 3	C	222	224	anti-parallel
Strand 4	C	520	522	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	250	first strand
Strand 2	C	257	263	anti-parallel
Strand 3	C	303	307	anti-parallel
Strand 4	C	289	294	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	337	first strand
Strand 2	C	342	343	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	416	first strand
Strand 2	C	447	448	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	542	546	first strand
Strand 2	D	535	539	anti-parallel
Strand 3	D	735	738	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	652	first strand
Strand 2	D	659	665	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	706	707	first strand
Strand 2	D	714	715	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Z9M

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Z9M