Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ZCF entry

There are 2 chains in PDB entry 7ZCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 PHE 329LYS 529
E
 GLU 1LYS 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 7ZCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
337 343Right-handed alpha
Helix 2
AA2
C
365 370Right-handed alpha
Helix 3
AA3
C
386 390Right-handed 310
Helix 4
AA4
C
403 410Right-handed 310
Helix 5
AA5
C
439 443Right-handed 310
Helix 6
AA6
E
213 217Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 7ZCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
354 358first strand
Strand 2
C
395 400anti-parallel
Strand 3
C
510 515anti-parallel
Strand 4
C
431 435anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
452 454first strand
Strand 2
C
492 494anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
18 20first strand
Strand 2
E
80 82anti-parallel
Strand 3
E
68 69anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
57 59first strand
Strand 2
E
46 51anti-parallel
Strand 3
E
33 38anti-parallel
Strand 4
E
95 98anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
137 139first strand
Strand 2
E
154 158anti-parallel
Strand 3
E
204 209anti-parallel
Strand 4
E
196 199anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
187 188first strand
Strand 2
E
179 183anti-parallel
Strand 3
E
167 171anti-parallel
Strand 4
E
220 224anti-parallel
Strand 5
E
231 232anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il