Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ZDB entry

There are 2 chains in PDB entry 7ZDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1GLY 554
D
 MET 1ALA 568
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 7ZDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
4 9Right-handed alpha
Helix 2
AA2
C
11 13Right-handed 310
Helix 3
AA3
C
14 50Right-handed alpha
Helix 4
AA4
C
53 57Right-handed 310
Helix 5
AA5
C
59 104Right-handed alpha
Helix 6
AA6
C
115 132Right-handed alpha
Helix 7
AA7
C
132 137Right-handed alpha
Helix 8
AA8
C
138 156Right-handed alpha
Helix 9
AA9
C
159 183Right-handed alpha
Helix 10
AB1
C
185 209Right-handed alpha
Helix 11
AB2
C
209 216Right-handed alpha
Helix 12
AB3
C
220 269Right-handed alpha
Helix 13
AB4
C
278 290Right-handed alpha
Helix 14
AB5
C
299 319Right-handed alpha
Helix 15
AB6
C
378 387Right-handed alpha
Helix 16
AB7
C
405 407Right-handed 310
Helix 17
AB8
C
408 415Right-handed alpha
Helix 18
AB9
C
442 453Right-handed alpha
Helix 19
AC1
C
455 460Right-handed 310
Helix 20
AC2
C
462 466Right-handed 310
Helix 21
AC3
C
476 491Right-handed alpha
Helix 22
AC4
C
508 519Right-handed alpha
Helix 23
AC5
D
2 18Right-handed alpha
Helix 24
AC6
D
20 56Right-handed alpha
Helix 25
AC7
D
62 108Right-handed alpha
Helix 26
AC8
D
110 115Right-handed alpha
Helix 27
AC9
D
118 132Right-handed alpha
Helix 28
AD1
D
133 139Right-handed alpha
Helix 29
AD2
D
140 145Right-handed alpha
Helix 30
AD3
D
149 159Right-handed alpha
Helix 31
AD4
D
162 194Right-handed alpha
Helix 32
AD5
D
194 203Right-handed alpha
Helix 33
AD6
D
203 211Right-handed alpha
Helix 34
AD7
D
211 218Right-handed alpha
Helix 35
AD8
D
224 240Right-handed alpha
Helix 36
AD9
D
241 247Right-handed alpha
Helix 37
AE1
D
247 255Right-handed alpha
Helix 38
AE2
D
255 274Right-handed alpha
Helix 39
AE3
D
286 310Right-handed alpha
Helix 40
AE4
D
311 320Right-handed alpha
Helix 41
AE5
D
321 326Right-handed alpha
Helix 42
AE6
D
327 330Right-handed 310
Helix 43
AE7
D
388 397Right-handed alpha
Helix 44
AE8
D
417 422Right-handed alpha
Helix 45
AE9
D
439 444Right-handed alpha
Helix 46
AF1
D
451 462Right-handed alpha
Helix 47
AF2
D
464 471Right-handed 310
Helix 48
AF3
D
487 502Right-handed alpha
Helix 49
AF4
D
517 531Right-handed alpha
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There are 6 sheets in PDB entry 7ZDB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
356 362first strand
Strand 2
C
339 346anti-parallel
Strand 3
C
396 399anti-parallel
Strand 4
C
402 403anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
526 529first strand
Strand 2
C
368 372parallel
Strand 3
C
543 546parallel
Strand 4
C
549 550anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
416 418first strand
Strand 2
C
495 497parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
350 352first strand
Strand 2
D
406 408anti-parallel
Strand 3
D
411 412anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
355 358first strand
Strand 2
D
364 369anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
425 428first strand
Strand 2
D
506 509parallel
Strand 3
D
536 539parallel
Strand 4
D
378 382parallel
Strand 5
D
552 556parallel
Strand 6
D
561 565anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il