Analysis of interatomic Contacts of Structural Units in PDB entry:
7ZDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ZDC entry

There are 2 chains in PDB entry 7ZDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1LEU 573
D
 LYS 3ILE 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 55 helices in PDB entry 7ZDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
1 3Right-handed 310
Helix 2
AA2
C
4 9Right-handed alpha
Helix 3
AA3
C
10 13Right-handed 310
Helix 4
AA4
C
14 50Right-handed alpha
Helix 5
AA5
C
51 55Right-handed 310
Helix 6
AA6
C
59 104Right-handed alpha
Helix 7
AA7
C
115 131Right-handed alpha
Helix 8
AA8
C
132 137Right-handed alpha
Helix 9
AA9
C
137 156Right-handed alpha
Helix 10
AB1
C
159 176Right-handed alpha
Helix 11
AB2
C
176 185Right-handed alpha
Helix 12
AB3
C
190 208Right-handed alpha
Helix 13
AB4
C
209 215Right-handed alpha
Helix 14
AB5
C
218 266Right-handed alpha
Helix 15
AB6
C
278 289Right-handed alpha
Helix 16
AB7
C
290 293Right-handed 310
Helix 17
AB8
C
296 319Right-handed alpha
Helix 18
AB9
C
381 387Right-handed alpha
Helix 19
AC1
C
403 407Right-handed 310
Helix 20
AC2
C
408 415Right-handed alpha
Helix 21
AC3
C
442 453Right-handed alpha
Helix 22
AC4
C
456 460Right-handed 310
Helix 23
AC5
C
476 491Right-handed alpha
Helix 24
AC6
C
506 521Right-handed alpha
Helix 25
AC7
C
555 563Right-handed alpha
Helix 26
AC8
C
564 571Right-handed alpha
Helix 27
AC9
D
4 16Right-handed alpha
Helix 28
AD1
D
17 19Right-handed 310
Helix 29
AD2
D
20 54Right-handed alpha
Helix 30
AD3
D
58 61Right-handed 310
Helix 31
AD4
D
62 115Right-handed alpha
Helix 32
AD5
D
118 128Right-handed alpha
Helix 33
AD6
D
130 132Right-handed 310
Helix 34
AD7
D
133 139Right-handed alpha
Helix 35
AD8
D
139 159Right-handed alpha
Helix 36
AD9
D
162 172Right-handed alpha
Helix 37
AE1
D
174 179Right-handed alpha
Helix 38
AE2
D
183 211Right-handed alpha
Helix 39
AE3
D
211 217Right-handed alpha
Helix 40
AE4
D
220 247Right-handed alpha
Helix 41
AE5
D
247 273Right-handed alpha
Helix 42
AE6
D
286 296Right-handed alpha
Helix 43
AE7
D
297 306Right-handed alpha
Helix 44
AE8
D
310 330Right-handed alpha
Helix 45
AE9
D
388 398Right-handed alpha
Helix 46
AF1
D
417 422Right-handed alpha
Helix 47
AF2
D
439 444Right-handed alpha
Helix 48
AF3
D
451 462Right-handed alpha
Helix 49
AF4
D
473 477Right-handed 310
Helix 50
AF5
D
480 484Right-handed 310
Helix 51
AF6
D
487 500Right-handed alpha
Helix 52
AF7
D
517 529Right-handed alpha
Helix 53
AF8
D
543 547Right-handed 310
Helix 54
AF9
D
566 571Right-handed alpha
Helix 55
AG1
D
575 586Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 7ZDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
362 363first strand
Strand 2
C
339 342anti-parallel
Strand 3
C
396 399anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
416 419first strand
Strand 2
C
495 499parallel
Strand 3
C
525 530parallel
Strand 4
C
368 372parallel
Strand 5
C
542 545parallel
Strand 6
C
550 554anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
372 373first strand
Strand 2
D
350 352anti-parallel
Strand 3
D
406 408anti-parallel
Strand 4
D
411 412anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
364 366first strand
Strand 2
D
357 358anti-parallel
Strand 3
D
401 402anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
425 427first strand
Strand 2
D
506 510parallel
Strand 3
D
536 540parallel
Strand 4
D
378 382parallel
Strand 5
D
552 557parallel
Strand 6
D
560 565anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il